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[184659_at]

Description Y49F6B.5 /REP_DB=WormBase Gene ID /WP=CE25339 /TR=Q9N4U8 /GB=AAF60732.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 44      6grp_cgc > 35      6grp_cgc_sub > Cu      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 39
(1.8)
A 		46.3
(3)
A 		10.1
(-3)
A 		27.4
(-0.1)
A 		36
B 36.7
(3)
A 		31.6
(1.9)
A 		24.1
(0.3)
A 		9.2
(-3)
A 		28
C 38.8
(1.1)
A 		50.8
(3)
A 		13.4
(-3)
A 		17
(-2.4)
A 		37
avr 38.2
(2) 		42.9
(3) 		15.9
(-3) 		17.9
(-2.6) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 47.9
(2.9)
A 		48.9
(3)
A 		32.1
(0.6)
A 		35.6
(1.1)
A 		7.7
(-3)
A 		15.3
(-1.9)
A 		41
B 13.6
(-1)
A 		28.2
(3)
A 		6.1
(-3)
A 		23.4
(1.7)
A 		12.7
(-1.2)
A 		20.2
(0.8)
A 		22
C 29.2
(0)
A 		10.5
(-2.5)
A 		32.7
(0.5)
A 		6.8
(-3)
A 		6.7
(-3)
A 		51.7
(3)
A 		45
avr 30.2
(3) 		29.2
(2.7) 		23.6
(1.1) 		21.9
(0.7) 		9
(-3) 		29.1
(2.7) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.2
(3)
A 		10.1
(0.9)
A 		2.6
(-3)
A 		4
(-2.3)
A 		12
B 11.7
(3)
A 		7.8
(0.6)
A 		5.6
(-0.8)
A 		2
(-3)
A 		10
C 12.8
(2.1)
A 		14.6
(3)
A 		4.7
(-2.1)
A 		2.9
(-3)
A 		12
avr 12.9
(3) 		10.8
(1.7) 		4.3
(-2.2) 		3
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 8.8
(-0.4)
A 		17.4
(3)
A 		7
(-1.1)
A 		9
(-0.3)
A 		2.3
(-3)
A 		3.7
(-2.4)
A 		15
B 4.7
(-0.6)
A 		9.4
(3)
A 		1.5
(-3)
A 		6.2
(0.6)
A 		5.2
(-0.2)
A 		7.5
(1.6)
A 		8
C 10.8
(0.5)
A 		3.2
(-2.3)
A 		8.3
(-0.4)
A 		1.4
(-3)
A 		2.2
(-2.7)
A 		17.3
(3)
A 		16
avr 8.1
(1.3) 		10
(3) 		5.6
(-0.9) 		5.5
(-1) 		3.2
(-3) 		9.5
(2.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184659_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4470
Sequence Type Exemplar sequence
Representative Public ID Y49F6B.5 NCBI
Target Description Y49F6B.5 /REP_DB=WormBase Gene ID /WP=CE25339 /TR=Q9N4U8 /GB=AAF60732.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062155(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062155 NCBI Caenorhabditis elegans Y49F6B.5 (Y49F6B.5) mRNA, complete cds. 11/11 None
SNAP00000021093 ENSEMBL cdna:SNAP chromosome:CEL140:II:3474049:3490072:1 11/11 None
GENEFINDER00000021116 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3474049:3474418:1 10/11 None
Y49F6B.5 ENSEMBL cdna:known chromosome:CEL140:II:3474049:3474724:1 gene:Y49F6B.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3474047-3474723(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-32
Ensembl Y49F6B.5
Entrez Gene 190080 Entrez gene
SwissProt Q9N4U8 EMBL-EBI
WormBase CE25339 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494559 Suppressor of Mec and Unc defects family member (smu-2) [Caenorhabditis elegans] gb|AAF60731.1| Suppressor of mec and unc defects protein 2 [Caenorhabditis elegans] 0.0
blast CAE70949 Hypothetical protein CBG17759 [Caenorhabditis briggsae] 1.0E-162
blast NP_494556 Y49F6B.5 [Caenorhabditis elegans] gb|AAF60732.1| Hypothetical protein Y49F6B.5 [Caenorhabditis elegans] 1.0E-106
blast NP_494556 Y49F6B.5 [Caenorhabditis elegans] gb|AAF60732.1| Hypothetical protein Y49F6B.5 [Caenorhabditis elegans] 1.0E-102
blast NP_494556 Y49F6B.5 [Caenorhabditis elegans] gb|AAF60732.1| Hypothetical protein Y49F6B.5 [Caenorhabditis elegans] 1.0E-55
blast CAE60640 Hypothetical protein CBG04284 [Caenorhabditis briggsae] 8.0E-30
blast CAE60640 Hypothetical protein CBG04284 [Caenorhabditis briggsae] 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:184659_AT
cccaacatccgttgaattcttcctcccaaacttttccaagagctccgaaaaaattgagaa
gaccgcggtcgaattgacgacggacttggcgaaaaaagaagtattgaagtttttgccaat
caggatcagacaacatctacagctctgctccaactgctccaacttaaaacggctggactc
cacaaccccataccagctggagacctgctcagtgggcaaaaatctcatcgagctggactt
tttcggttgctcttggagctttggcggaaagggcaaggtgactcttcgatttggaggtgg
acttcggaaggagttggatttaaagatcccaaaggaagaatcaatgcgaagaattctaaa
attctacctaacccggaaagggaccattgtgaagaagctgtggatcaaggatcaggaatc
agtgaagcttttggcttcgatgggggttttcaataaatttaatgtgtcgaatcaggaagg
tgtattgttggagaatctggaggatttggacgattttacgctgtcgaagatcacctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAACATCCGTTGAATTCTTCCTC 275 257 21 Antisense
TTCCTCCCAAACTTTTCCAAGAGCT 444 695 40 Antisense
GACCGCGGTCGAATTGACGACGGAC 349 381 81 Antisense
CAGACAACATCTACAGCTCTGCTCC 221 205 147 Antisense
CCAACTGCTCCAACTTAAAACGGCT 525 275 170 Antisense
CTGGAGACCTGCTCAGTGGGCAAAA 186 239 217 Antisense
AGTGGGCAAAAATCTCATCGAGCTG 345 59 231 Antisense
ATCGAGCTGGACTTTTTCGGTTGCT 17 35 247 Antisense
TCGGTTGCTCTTGGAGCTTTGGCGG 701 605 263 Antisense
GGGCAAGGTGACTCTTCGATTTGGA 323 455 291 Antisense
TTTACGCTGTCGAAGATCACCTGGA 218 673 535 Antisense
Sequence Source Affymetrix Proprietary Database