[Home] | [Total List]

[184656_at]

Description T19D12.3 /REP_DB=WormBase Gene ID /WP=CE04978 /TR=Q22577 /GB=AAC24424.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 13      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 57.7
(0.6)
P 		22.1
(-3)
A 		57.5
(0.6)
A 		81.4
(3)
P 		59
B 71.1
(3)
P 		28.8
(-3)
A 		29.9
(-2.8)
A 		65
(2.1)
A 		42
C 40.6
(-1.3)
A 		73.1
(1.7)
A 		21.7
(-3)
A 		88
(3)
P 		66
avr 56.5
(-0.1) 		41.3
(-2.3) 		36.4
(-3) 		78.1
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 132.9
(3)
P 		68.9
(-0.5)
P 		59.6
(-1)
P 		60.2
(-1)
P 		38.7
(-2.2)
A 		23.6
(-3)
A 		109
B 106.8
(3)
P 		60.3
(-1.1)
P 		39.1
(-3)
P 		85.6
(1.1)
M 		46.9
(-2.3)
A 		48.7
(-2.1)
A 		68
C 119.1
(3)
P 		99.4
(1.9)
P 		70.8
(0.4)
P 		7.3
(-3)
A 		31.8
(-1.7)
A 		59
(-0.2)
P 		112
avr 119.6
(3) 		76.2
(-0.2) 		56.5
(-1.7) 		51
(-2.1) 		39.1
(-3) 		43.8
(-2.6) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 21
(3)
P 		4.8
(-3)
A 		15
(0.8)
A 		11.9
(-0.4)
P 		16
B 22.7
(3)
P 		7.1
(-2.9)
A 		6.9
(-3)
A 		13.9
(-0.3)
A 		16
C 13.4
(-0.4)
A 		21
(3)
A 		7.6
(-3)
A 		14.8
(0.2)
P 		13
avr 19
(3) 		11
(-2.2) 		9.8
(-3) 		13.5
(-0.6) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 24.5
(3)
P 		24.5
(3)
P 		13
(-0.7)
P 		15.3
(0)
P 		11.7
(-1.1)
A 		5.8
(-3)
A 		19
B 37.2
(3)
P 		20.1
(-0.7)
P 		9.5
(-3)
P 		22.7
(-0.1)
M 		19
(-0.9)
A 		18.2
(-1.1)
A 		28
C 44.1
(3)
P 		30.3
(1.1)
P 		18
(-0.7)
P 		1.5
(-3)
A 		10.3
(-1.8)
A 		19.8
(-0.4)
P 		43
avr 35.3
(3) 		25
(0.2) 		13.5
(-2.9) 		13.2
(-3) 		13.7
(-2.9) 		14.6
(-2.6) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184656_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4989
Sequence Type Exemplar sequence
Representative Public ID T19D12.3 NCBI
Target Description T19D12.3 /REP_DB=WormBase Gene ID /WP=CE04978 /TR=Q22577 /GB=AAC24424.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062954(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062954 NCBI Caenorhabditis elegans T19D12.3 (T19D12.3) mRNA, complete cds. 11/11 None
GENEFINDER00000003097 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6659997:6664948:1 11/11 None
T19D12.3 ENSEMBL cdna:known chromosome:CEL140:II:6660217:6660937:1 gene:T19D12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003088 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6660213-6660934(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19D12.3
Entrez Gene 188607 Entrez gene
SwissProt Q22577 EMBL-EBI
WormBase CE04978 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO38593 Hypothetical protein T19D12.2a [Caenorhabditis elegans] ref|NP_495356.3| T19D12.2a [Caenorhabditis elegans] 0.0
blast AAO38595 Hypothetical protein T19D12.2c [Caenorhabditis elegans] ref|NP_872040.1| T19D12.2c [Caenorhabditis elegans] 0.0
blast AAC24428 Hypothetical protein T19D12.1 [Caenorhabditis elegans] ref|NP_495357.1| T19D12.1 [Caenorhabditis elegans] 0.0
blast AAC24424 Hypothetical protein T19D12.3 [Caenorhabditis elegans] ref|NP_495355.1| T19D12.3 [Caenorhabditis elegans] 1.0E-101
blast AAO38593 Hypothetical protein T19D12.2a [Caenorhabditis elegans] ref|NP_495356.3| T19D12.2a [Caenorhabditis elegans] 2.0E-54
blast AAC24428 Hypothetical protein T19D12.1 [Caenorhabditis elegans] ref|NP_495357.1| T19D12.1 [Caenorhabditis elegans] 2.0E-47
Sequence
Target Sequence 
>C. ELEGANS:184656_AT
atcaatattccatatgctcacacggattattacgggtcatacctcttacaatacggtgga
gcaaaaagtttgatggctcttcagagcaatattgatacactttttagcaactctatcttc
tcaatagatactacagtttccgatggtcttatttggctcagcgataactatccagatggg
gcaaatactattgtcattgttgttggataccattctgacgatgataatggaagaacgtac
actactctgacacatttgagatcacgaggttataaagttatttcggttgctgctggtgta
gggcatggagatttatcctatatcgctgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAATATTCCATATGCTCACACGG 184 27 136 Antisense
GCTCACACGGATTATTACGGGTCAT 577 299 151 Antisense
ACGGGTCATACCTCTTACAATACGG 677 95 167 Antisense
TTTTAGCAACTCTATCTTCTCAATA 710 675 237 Antisense
GATACTACAGTTTCCGATGGTCTTA 15 425 262 Antisense
CCGATGGTCTTATTTGGCTCAGCGA 168 265 275 Antisense
GGCTCAGCGATAACTATCCAGATGG 296 539 290 Antisense
GTTGGATACCATTCTGACGATGATA 640 435 337 Antisense
AACGTACACTACTCTGACACATTTG 664 143 369 Antisense
AAAGTTATTTCGGTTGCTGCTGGTG 174 123 409 Antisense
GGAGATTTATCCTATATCGCTGACG 187 517 442 Antisense
Sequence Source Affymetrix Proprietary Database