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[184654_at]

Description C01G10.13 /REP_DB=WormBase Gene ID /WP=CE07822 /TR=Q93172 /GB=CAB02714.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 10      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 2.2
(-3)
A 		7.1
(-2.2)
A 		2.6
(-2.9)
A 		36.8
(3)
A 		35
B 2.2
(-3)
A 		2.4
(-3)
A 		2.5
(-2.9)
A 		31.3
(3)
A 		29
C 1.5
(-3)
A 		8.5
(-2.4)
A 		6.4
(-2.6)
A 		75.7
(3)
P 		74
avr 2
(-3) 		6
(-2.5) 		3.8
(-2.8) 		47.9
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 23.8
(1.9)
A 		3.3
(-2.9)
A 		28.5
(3)
A 		4.6
(-2.6)
A 		3
(-3)
A 		6.5
(-2.2)
A 		26
B 2
(-2.2)
A 		1.6
(-2.7)
A 		6
(3)
A 		2.3
(-1.8)
A 		3.3
(-0.5)
A 		1.4
(-3)
A 		5
C 1.5
(-3)
A 		52.6
(3)
A 		4.8
(-2.6)
A 		10.6
(-1.9)
A 		1.5
(-3)
A 		1.9
(-3)
A 		51
avr 9.1
(-0.7) 		19.2
(3) 		13.1
(0.8) 		5.8
(-1.8) 		2.6
(-3) 		3.3
(-2.7) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.8
(-2.9)
A 		1.5
(-2)
A 		0.7
(-3)
A 		5.4
(3)
A 		5
B 0.7
(-2.9)
A 		0.6
(-3)
A 		0.6
(-3)
A 		6.7
(3)
A 		6
C 0.5
(-3)
A 		2.4
(-2.1)
A 		2.2
(-2.2)
A 		12.8
(3)
P 		12
avr 0.7
(-3) 		1.5
(-2.4) 		1.2
(-2.6) 		8.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 4.4
(1)
A 		1.2
(-2.7)
A 		6.2
(3)
A 		1.2
(-2.7)
A 		0.9
(-3)
A 		1.6
(-2.2)
A 		5
B 0.7
(-1.8)
A 		0.5
(-3)
A 		1.5
(3)
A 		0.6
(-2.4)
A 		1.3
(1.8)
A 		0.5
(-3)
A 		1
C 0.6
(-3)
A 		16.1
(3)
A 		1.2
(-2.7)
A 		2.1
(-2.4)
A 		0.5
(-3)
A 		0.6
(-3)
A 		16
avr 1.9
(-1.8) 		5.9
(3) 		3
(-0.5) 		1.3
(-2.5) 		0.9
(-3) 		0.9
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184654_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14113
Sequence Type Exemplar sequence
Representative Public ID C01G10.13 NCBI
Target Description C01G10.13 /REP_DB=WormBase Gene ID /WP=CE07822 /TR=Q93172 /GB=CAB02714.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074323(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074323 NCBI Caenorhabditis elegans C01G10.13 (C01G10.13) mRNA, complete cds. 11/11 None
C01G10.13 ENSEMBL cdna:known chromosome:CEL140:V:15108680:15109059:-1 gene:C01G10.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15108679-15109059(-) 40.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01G10.13
Entrez Gene 182085 Entrez gene
SwissProt Q93172 EMBL-EBI
WormBase CE07822 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02714 Hypothetical protein C01G10.13 [Caenorhabditis elegans] ref|NP_506724.1| C01G10.13 [Caenorhabditis elegans] 3.0E-56
blast T31900 hypothetical protein T05H4.8 - Caenorhabditis elegans 1.0E-23
blast CAA94345 Hypothetical protein F49E11.3 [Caenorhabditis elegans] ref|NP_502496.1| AMmonium Transporter homolog family member (amt-2) [Caenorhabditis elegans] sp|Q20605|AMT2_CAEEL Putative ammonium transporter 2.0E-12
Sequence
Target Sequence 
>C. ELEGANS:184654_AT
atgtgtgggaaccgaacgcacaatcttctgctcaagaggcgaatgcgttcaccactcgac
caccgaagcgatgttttcccccgtccaccattgtgtactacattttcagatgaaaatttc
caaactcaaagaggtcttccgccgaaacaaattacagattctgaaagcctaagatgccag
ctatcggatgacacgtttacttttacccgatcgcaccgtatagttaaaatactccctagt
cagtttacagtggtcctcaatattttcgacaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGTGGGAACCGAACGCACAATC 245 49 13 Antisense
GAACCGAACGCACAATCTTCTGCTC 342 347 21 Antisense
AACGCACAATCTTCTGCTCAAGAGG 559 145 27 Antisense
CCCGTCCACCATTGTGTACTACATT 178 259 92 Antisense
CCAAACTCAAAGAGGTCTTCCGCCG 436 255 132 Antisense
GATGCCAGCTATCGGATGACACGTT 511 415 185 Antisense
AAAATACTCCCTAGTCAGTTTACAG 120 133 238 Antisense
CTCCCTAGTCAGTTTACAGTGGTCC 550 233 244 Antisense
TAGTCAGTTTACAGTGGTCCTCAAT 669 653 249 Antisense
GTTTACAGTGGTCCTCAATATTTTC 566 449 255 Antisense
GTGGTCCTCAATATTTTCGACAATT 328 489 262 Antisense
Sequence Source Affymetrix Proprietary Database