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[184653_at]

Description C43E11.2 /REP_DB=WormBase Gene ID /WP=CE08680 /TR=P91153 /GB=AAB37627.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 92      6grp_total > 78      4grp_total > 06      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 293.6
(3)
P 		214.7
(-0.5)
P 		156.7
(-3)
P 		243.8
(0.8)
P 		137
B 213.9
(-2.6)
P 		203.6
(-3)
P 		215.7
(-2.5)
P 		347.4
(3)
P 		144
C 290.5
(-0.3)
P 		163.8
(-3)
P 		272.7
(-0.7)
P 		443.1
(3)
P 		279
avr 266
(-0.1) 		194
(-3) 		215
(-2.2) 		344.8
(3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 355
1 2 3 4 5 6 range
A 237.7
(-2.4)
P 		285.4
(-1.2)
P 		234.1
(-2.5)
P 		213.7
(-3)
P 		360.6
(0.7)
P 		453.1
(3)
P 		239
B 273
(-2)
P 		234.7
(-2.6)
P 		212.8
(-3)
P 		247.2
(-2.4)
P 		319.8
(-1.2)
P 		568
(3)
P 		355
C 275.3
(-1.8)
P 		215.3
(-3)
P 		258.6
(-2.1)
P 		303.5
(-1.2)
P 		402.7
(0.8)
P 		514.9
(3)
P 		300
avr 262
(-2.4) 		245.1
(-2.8) 		235.2
(-3) 		254.8
(-2.6) 		361
(-0.3) 		512
(3) 		277
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 106.9
(3)
P 		46.6
(-2.1)
P 		41
(-2.6)
P 		35.7
(-3)
P 		71
B 68.2
(1.6)
P 		50.3
(-2.9)
P 		50
(-3)
P 		74
(3)
P 		24
C 96.1
(3)
P 		47.1
(-3)
P 		95
(2.9)
P 		74.7
(0.4)
P 		49
avr 90.4
(3) 		48
(-3) 		62
(-1) 		61.5
(-1.1) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 43.8
(-3)
P 		101.5
(2.2)
P 		51
(-2.4)
P 		54.2
(-2.1)
P 		108.8
(2.9)
P 		110.3
(3)
P 		67
B 95
(-1.4)
P 		78.1
(-2)
P 		51.7
(-3)
P 		65.5
(-2.5)
P 		129.9
(-0.1)
P 		211.8
(3)
P 		160
C 102
(-0.8)
P 		65.7
(-2.7)
P 		65.8
(-2.7)
P 		61
(-3)
P 		130.3
(0.7)
P 		172.4
(3)
P 		111
avr 80.3
(-1.7) 		81.8
(-1.6) 		56.2
(-3) 		60.2
(-2.8) 		123
(0.7) 		164.8
(3) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184653_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.446
Sequence Type Exemplar sequence
Representative Public ID C43E11.2 NCBI
Target Description C43E11.2 /REP_DB=WormBase Gene ID /WP=CE08680 /TR=P91153 /GB=AAB37627.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058940(11), NM_181997(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058940 NCBI Caenorhabditis elegans C43E11.2a (C43E11.2) mRNA, complete cds. 11/11 None
NM_181997 NCBI Caenorhabditis elegans C43E11.2b (C43E11.2) mRNA, complete cds. 10/11 None
SNAP00000031018 ENSEMBL cdna:SNAP chromosome:CEL140:I:4265110:4267175:1 11/11 None
GENEFINDER00000031021 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4265110:4267146:1 11/11 None
C43E11.2a ENSEMBL cdna:known chromosome:CEL140:I:4265110:4267176:1 gene:C43E11.2 11/11 None
C43E11.2b ENSEMBL cdna:known chromosome:CEL140:I:4266569:4267175:1 gene:C43E11.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4265109-4267175(+) 100.0 100.0
Public Domain and Genome References
Ensembl C43E11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37627 Hypothetical protein C43E11.2a [Caenorhabditis elegans] ref|NP_491341.1| C43E11.2a [Caenorhabditis elegans] 0.0
blast CAE66816 Hypothetical protein CBG12181 [Caenorhabditis briggsae] 1.0E-180
blast CAE66816 Hypothetical protein CBG12181 [Caenorhabditis briggsae] 1.0E-176
blast CAE66816 Hypothetical protein CBG12181 [Caenorhabditis briggsae] 1.0E-154
blast AAN84841 Hypothetical protein C43E11.2b [Caenorhabditis elegans] ref|NP_871797.1| C43E11.2b [Caenorhabditis elegans] 4.0E-90
blast AAB37627 Hypothetical protein C43E11.2a [Caenorhabditis elegans] ref|NP_491341.1| C43E11.2a [Caenorhabditis elegans] 4.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR006166 EMBL-EBI ERCC4 domain 3.3E-53
Pfam IPR006166 EMBL-EBI ERCC4 domain 5.7E-21
Pfam IPR006166 EMBL-EBI ERCC4 domain 3.3E-53
Sequence
Target Sequence 
>C. ELEGANS:184653_AT
agttgatattcgttctctttccgttggagattacatatggatttgtcgaaagattgatgg
aactgagattgtgatggattgggttgtagaacggaaaacttgggatgatctgcaatcaag
tattcgtggaggtagatatgatgagcagaaaggacgattgaatatggctccgatgaagaa
tcgagtttatttgattgaagctcaacataaaggagatgttgcttgcgaacaggccgtagc
atcaactctttccaatggaggatatcttattcaaagatgctctgatactcgagacacagc
tgcatttctcaaggaagtgacgattcgtttgcagaacaaagcggccatagaagaaatttc
gggtgttccattcagccaactccagaatcttctccagaaaaagaaggcggaaactgtgaa
agaagcttgggtccgacagctgatggtttgcccgggaatgtctcagaatcgagccgaagc
aattgccgatcgatttccatccatggtatccctgctttcatattttcgtgcaaatggaga
cgatgcaccgattcgacttcttcagcttttacctcaactaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTGATATTCGTTCTCTTTCCGTT 146 65 726 Antisense
GCTTGCGAACAGGCCGTAGCATCAA 706 305 946 Antisense
GATACTCGAGACACAGCTGCATTTC 673 423 1009 Antisense
AGAAATTTCGGGTGTTCCATTCAGC 363 67 1077 Antisense
TGGGTCCGACAGCTGATGGTTTGCC 654 551 1153 Antisense
GTTTGCCCGGGAATGTCTCAGAATC 579 449 1171 Antisense
CGAGCCGAAGCAATTGCCGATCGAT 670 249 1195 Antisense
CGATTTCCATCCATGGTATCCCTGC 574 247 1216 Antisense
ATCCCTGCTTTCATATTTTCGTGCA 238 39 1233 Antisense
TGGAGACGATGCACCGATTCGACTT 485 547 1260 Antisense
TTCTTCAGCTTTTACCTCAACTAAC 149 691 1283 Antisense
Sequence Source Affymetrix Proprietary Database