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[184652_at]

Description C34D4.11 /REP_DB=WormBase Gene ID /WP=CE17505 /TR=Q18444 /GB=AAB00696.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 45      6grp_cgc > 89      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 77.5
(3)
A 		17.2
(-3)
A 		69.9
(2.2)
A 		75.6
(2.8)
A 		60
B 48.4
(-0.2)
A 		84.1
(3)
A 		16.6
(-3)
A 		72.4
(2)
M 		68
C 55.2
(1.6)
A 		69.9
(3)
A 		69.6
(3)
A 		6.6
(-3)
A 		63
avr 60.4
(3) 		57.1
(0.8) 		52
(-2.7) 		51.5
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 57
(-1.3)
A 		53.3
(-1.5)
A 		39.2
(-2.4)
A 		29.5
(-3)
A 		70.9
(-0.4)
A 		124.4
(3)
P 		95
B 87.2
(3)
A 		31.4
(-1.8)
A 		67.4
(1.3)
A 		60.4
(0.7)
A 		64.8
(1.1)
A 		17.4
(-3)
A 		70
C 37.1
(-2.9)
A 		47
(-1.2)
A 		70.6
(3)
A 		57.1
(0.6)
A 		59.6
(1)
A 		36.8
(-3)
A 		34
avr 60.4
(1.7) 		43.9
(-3) 		59.1
(1.3) 		49
(-1.6) 		65.1
(3) 		59.5
(1.4) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 28.2
(3)
A 		3.7
(-3)
A 		18.3
(0.6)
A 		11.1
(-1.2)
A 		25
B 15.4
(1.1)
A 		20.8
(3)
A 		3.8
(-3)
A 		15.4
(1.1)
M 		17
C 18.3
(1.4)
A 		20.1
(1.9)
A 		24.3
(3)
A 		1.1
(-3)
A 		23
avr 20.6
(3) 		14.9
(-0) 		15.5
(0.3) 		9.2
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 10.5
(-2.2)
A 		19
(0)
A 		8.5
(-2.7)
A 		7.5
(-3)
A 		21.4
(0.7)
A 		30.3
(3)
P 		23
B 30.4
(3)
A 		10.5
(-2)
A 		16.4
(-0.5)
A 		16
(-0.6)
A 		26.3
(2)
A 		6.5
(-3)
A 		24
C 13.8
(-1.2)
A 		14.3
(-0.8)
A 		18
(2)
A 		11.5
(-3)
A 		19.3
(3)
A 		12.3
(-2.4)
A 		8
avr 18.2
(0.7) 		14.6
(-1.4) 		14.3
(-1.5) 		11.7
(-3) 		22.3
(3) 		16.4
(-0.3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184652_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8538
Sequence Type Exemplar sequence
Representative Public ID C34D4.11 NCBI
Target Description C34D4.11 /REP_DB=WormBase Gene ID /WP=CE17505 /TR=Q18444 /GB=AAB00696.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068716(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068716 NCBI Caenorhabditis elegans C34D4.11 (C34D4.11) mRNA, complete cds. 11/11 None
SNAP00000003799 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7130688:7131839:-1 11/11 None
GENEFINDER00000003820 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7130526:7131839:-1 11/11 None
C34D4.11 ENSEMBL cdna:known chromosome:CEL140:IV:7130688:7131839:-1 gene:C34D4.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7130693-7131845(-) 65.21 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grsp-3
Ensembl C34D4.11
Entrez Gene 183209 Entrez gene
SwissProt Q18444 EMBL-EBI
WormBase CE17505 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:184652_AT
gttagcgttattcgttctattccttactttcttcgaaacatacgcccaatggggttgggg
accaccatcaccatggggatttagaccttctccgttctttggtggacgatctggaggatg
gggaagacccggatggggcggaggtggtcctggatggggacgaggaggcggtggaagcgg
atggggaggtggccgaggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTAGCGTTATTCGTTCTATTCCTT 217 447 21 Antisense
TCGTTCTATTCCTTACTTTCTTCGA 14 605 32 Antisense
CTTTCTTCGAAACATACGCCCAATG 118 213 47 Antisense
CAATGGGGTTGGGGACCACCATCAC 581 181 67 Antisense
CATGGGGATTTAGACCTTCTCCGTT 44 209 92 Antisense
CTTCTCCGTTCTTTGGTGGACGATC 31 217 107 Antisense
GTTCTTTGGTGGACGATCTGGAGGA 104 443 114 Antisense
GGAAGACCCGGATGGGGCGGAGGTG 397 525 142 Antisense
TGGATGGGGACGAGGAGGCGGTGGA 375 549 171 Antisense
AGGCGGTGGAAGCGGATGGGGAGGT 500 51 186 Antisense
AGCGGATGGGGAGGTGGCCGAGGTG 439 81 196 Antisense
Sequence Source Affymetrix Proprietary Database