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[184651_at]

Description Y47D9A.3 /REP_DB=WormBase Gene ID /WP=CE22070 /TR=Q9N4V6 /GB=AAF60645.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.8
(-3)
A 		8
(0.2)
A 		3.2
(-2.8)
A 		12.7
(3)
A 		10
B 1.8
(-3)
A 		4.9
(3)
A 		2.9
(-0.9)
A 		2.5
(-1.6)
A 		3
C 4
(-2.4)
A 		3
(-3)
A 		12.4
(3)
A 		4.3
(-2.2)
A 		9
avr 2.9
(-3) 		5.3
(1) 		6.2
(2.5) 		6.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 5
(3)
A 		1.5
(-2.7)
A 		5
(3)
A 		1.9
(-2)
A 		1.9
(-2)
A 		1.3
(-3)
A 		4
B 2.7
(-1.2)
A 		2.9
(-0.9)
A 		4.1
(1.1)
A 		2.1
(-2.2)
A 		5.3
(3)
A 		1.6
(-3)
A 		4
C 6.9
(3)
A 		6.9
(3)
A 		4.3
(-0)
A 		4
(-0.3)
A 		2.5
(-2.1)
A 		1.7
(-3)
A 		5
avr 4.9
(3) 		3.8
(1.1) 		4.5
(2.3) 		2.7
(-0.9) 		3.2
(0) 		1.5
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1
(-1.9)
A 		1.7
(1.9)
A 		0.8
(-3)
A 		1.9
(3)
A 		1
B 0.6
(-2.1)
A 		1.2
(3)
A 		0.7
(-1.3)
A 		0.5
(-3)
A 		1
C 1.3
(-2)
A 		0.9
(-2.7)
A 		4.3
(3)
A 		0.7
(-3)
A 		4
avr 1
(-3) 		1.3
(-1) 		1.9
(3) 		1
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.9
(1.5)
A 		0.5
(-1.5)
A 		1.1
(3)
A 		0.5
(-1.5)
A 		0.6
(-0.8)
A 		0.3
(-3)
A 		1
B 0.9
(-1.8)
A 		1
(-1.4)
A 		1
(-1.4)
A 		0.6
(-3)
A 		2.1
(3)
A 		0.6
(-3)
A 		2
C 2.6
(3)
A 		2.1
(1.5)
A 		1.1
(-1.5)
A 		0.8
(-2.4)
A 		0.8
(-2.4)
A 		0.6
(-3)
A 		2
avr 1.5
(3) 		1.2
(1.2) 		1.1
(0.6) 		0.6
(-2.4) 		1.2
(1.2) 		0.5
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184651_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1195
Sequence Type Exemplar sequence
Representative Public ID Y47D9A.3 NCBI
Target Description Y47D9A.3 /REP_DB=WormBase Gene ID /WP=CE22070 /TR=Q9N4V6 /GB=AAF60645.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058945(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058945 NCBI Caenorhabditis elegans Y47D9A.3 (Y47D9A.3) mRNA, complete cds. 9/11 None
SNAP00000009714 ENSEMBL cdna:SNAP chromosome:CEL140:I:4275932:4276940:1 11/11 None
GENEFINDER00000009720 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4275944:4276940:1 11/11 None
Y47D9A.3 ENSEMBL cdna:known chromosome:CEL140:I:4275932:4276754:1 gene:Y47D9A.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4275931-4276940(+) 100.0 100.0
chrV:9484764-9485766(+) 93.82 93.82
Public Domain and Genome References
Gene Title
Ensembl Y47D9A.3
Entrez Gene 189989 Entrez gene
SwissProt Q9N4V6 EMBL-EBI
WormBase CE34398 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491346.2 1 10-32
Y47D9A.3 1 10-32
Sequence
Target Sequence 
>C. ELEGANS:184651_AT
ggagctgttattgcagtctcgtgtacatcgggccaacgtgaaaactccagagctggcaaa
ggaaagtctggacgatcgaaacgttccaagcgtgataagaagaaccagaacagagacaga
agaaggctccagctgatgccggtaactcctgcttctccatcggctcctgccaagggtggt
gccggtgctgcaaagtctgcggcctcgaaagaaggatcacagagagtcaaaaagtcaaag
aaaccttcggagagagagaaagcaccaaaggaggacaagaacgagggatcttcgagagcc
aaaaaggcttcaaaggagaaccaggatgctgataagaagcctgaggaagaaggaaagact
ccgccaccagccaaccgtgatgatgaaactaaggcaccagctccagtcgaaccatctcca
aagcccgaggaagaggtcaagccggta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCTGTTATTGCAGTCTCGTGTA 659 521 85 Antisense
TATTGCAGTCTCGTGTACATCGGGC 145 665 93 Antisense
TCTCGTGTACATCGGGCCAACGTGA 594 609 101 Antisense
GTGTACATCGGGCCAACGTGAAAAC 13 487 105 Antisense
GAAAGTCTGGACGATCGAAACGTTC 605 335 146 Antisense
GACGATCGAAACGTTCCAAGCGTGA 65 379 155 Antisense
AGAAGAACCAGAACAGAGACAGAAG 116 75 182 Antisense
GAAAGAAGGATCACAGAGAGTCAAA 347 359 291 Antisense
AAGTCAAAGAAACCTTCGGAGAGAG 10 157 316 Antisense
AACCATCTCCAAAGCCCGAGGAAGA 693 147 494 Antisense
GCCCGAGGAAGAGGTCAAGCCGGTA 332 281 507 Antisense
Sequence Source Affymetrix Proprietary Database