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[184650_at]

Description C08E3.12 /REP_DB=WormBase Gene ID /WP=CE08015 /TR=O17203 /GB=AAB70970.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 32.3
(-2.6)
A 		27.4
(-3)
A 		38.5
(-2)
A 		96.3
(3)
M 		69
B 23.7
(-3)
A 		73
(3)
P 		47.8
(-0.1)
P 		27.4
(-2.5)
A 		49
C 56.2
(1.1)
A 		61.7
(2.2)
A 		35.3
(-3)
A 		65.8
(3)
P 		31
avr 37.4
(-3) 		54
(0.9) 		40.5
(-2.3) 		63.2
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 65.5
(3)
A 		33.1
(-1)
P 		17.2
(-3)
A 		33.8
(-0.9)
A 		20.8
(-2.6)
A 		40.2
(-0.1)
A 		48
B 38.9
(-0.4)
P 		21.9
(-2.4)
A 		57.4
(1.8)
A 		67.7
(3)
A 		16.7
(-3)
A 		21.9
(-2.4)
A 		51
C 39.6
(-0.3)
A 		68.8
(3)
P 		22.5
(-2.3)
A 		63
(2.3)
A 		35.4
(-0.8)
A 		15.9
(-3)
A 		53
avr 48
(1.7) 		41.3
(0.3) 		32.4
(-1.4) 		54.8
(3) 		24.3
(-3) 		26
(-2.7) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.8
(1.3)
A 		5.9
(-3)
A 		10.1
(0.1)
A 		14.1
(3)
M 		8
B 7.6
(-2.1)
A 		18
(3)
P 		11.1
(-0.4)
P 		5.8
(-3)
A 		12
C 18.6
(3)
A 		17.7
(2.3)
A 		12.3
(-2)
A 		11.1
(-3)
P 		8
avr 12.7
(1) 		13.9
(3) 		11.2
(-1.5) 		10.3
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 12.1
(3)
A 		11.8
(2.8)
P 		3.8
(-3)
A 		8.6
(0.5)
A 		6.3
(-1.2)
A 		9.8
(1.3)
A 		8
B 13.6
(0.7)
P 		7.3
(-2.7)
A 		13.9
(0.8)
A 		17.9
(3)
A 		6.8
(-3)
A 		8.2
(-2.2)
A 		11
C 14.7
(0.6)
A 		21
(3)
P 		5.7
(-2.8)
A 		12.7
(-0.2)
A 		11.5
(-0.6)
A 		5.3
(-3)
A 		16
avr 13.5
(3) 		13.4
(2.9) 		7.8
(-3) 		13.1
(2.6) 		8.2
(-2.6) 		7.8
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184650_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4242
Sequence Type Exemplar sequence
Representative Public ID C08E3.12 NCBI
Target Description C08E3.12 /REP_DB=WormBase Gene ID /WP=CE08015 /TR=O17203 /GB=AAB70970.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061616(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061616 NCBI Caenorhabditis elegans C08E3.12 (C08E3.12) mRNA, complete cds. 11/11 None
SNAP00000042053 ENSEMBL cdna:SNAP chromosome:CEL140:II:1623911:1624676:-1 11/11 None
C08E3.12 ENSEMBL cdna:known chromosome:CEL140:II:1623911:1624676:-1 gene:C08E3.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1623909-1624675(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08E3.12
Entrez Gene 182404 Entrez gene
SwissProt O17203 EMBL-EBI
WormBase CE08015 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70970 Hypothetical protein C08E3.12 [Caenorhabditis elegans] ref|NP_494017.1| C08E3.12 [Caenorhabditis elegans] 1.0E-139
blast AAB70967 Hypothetical protein C08E3.8 [Caenorhabditis elegans] ref|NP_494013.1| C08E3.8 [Caenorhabditis elegans] 1.0E-82
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 6.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.7E-41
Sequence
Target Sequence 
>C. ELEGANS:184650_AT
aacattccgactttcgaatccaactaagcaagaaactccaaagaaattcattgactgcgc
cgagaaaacttttaagtctgcaaaaagcgcgaccagaacggtgctagcaaaatacttttc
atggagagaacttgcacaactcttgcccattttccaagctggaaaactggaagaaattag
tttcgaaagggccaggattgatggatatgagcagctggtctgcctggaccaagggaagaa
cgctagaaaatttaatggattttggagttttactattccaattgagcactgtttgcattt
cgagtgcttcaaaaatcatttcttgagattcacagaagaagatgcattgaaaattcgcga
tatgattgatagatccgcttattttggtcatgctgagatcaccatatatccagaatccac
ctatccatctatgccgagaataccatctatgctgaaaaaagtattcgatgtgcacaacga
gaatctcaaatccgtctaccgaactccggacaacagggttttcgaaattcaatggttacc
tccagtgctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACATTCCGACTTTCGAATCCAACT 79 137 153 Antisense
GAAATTCATTGACTGCGCCGAGAAA 676 363 195 Antisense
AAGCGCGACCAGAACGGTGCTAGCA 620 147 237 Antisense
AGAGAACTTGCACAACTCTTGCCCA 455 69 277 Antisense
TATGAGCAGCTGGTCTGCCTGGACC 342 657 358 Antisense
GATCCGCTTATTTTGGTCATGCTGA 80 417 524 Antisense
ATATATCCAGAATCCACCTATCCAT 424 19 556 Antisense
CCTATCCATCTATGCCGAGAATACC 208 269 572 Antisense
GAATCTCAAATCCGTCTACCGAACT 107 329 633 Antisense
GTCTACCGAACTCCGGACAACAGGG 428 447 646 Antisense
ATTCAATGGTTACCTCCAGTGCTAT 591 11 679 Antisense
Sequence Source Affymetrix Proprietary Database