[Home] | [Total List]

[184647_at] 7TM chemoreceptor, srv family

Description H04M03.9 /REP_DB=WormBase Gene ID /WP=CE20928 /TR=Q9TYR4 /GB=AAD12795.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 02      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 2
(-3)
A 		5.5
(-2.1)
A 		3.4
(-2.6)
A 		25.1
(3)
A 		23
B 3.6
(0.6)
A 		3.6
(0.6)
A 		2.1
(-3)
A 		4.6
(3)
A 		3
C 3
(-2.9)
A 		1.9
(-3)
A 		2.1
(-3)
A 		92
(3)
P 		90
avr 2.9
(-2.9) 		3.7
(-2.8) 		2.5
(-3) 		40.6
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 4.4
(-0.9)
A 		1.8
(-3)
A 		9.4
(3)
A 		2.8
(-2.2)
A 		3.4
(-1.7)
A 		2
(-2.8)
A 		8
B 2.5
(-1.6)
A 		2.3
(-1.9)
A 		5.4
(3)
A 		2.9
(-0.9)
A 		4.4
(1.4)
A 		1.6
(-3)
A 		4
C 1.7
(-3)
A 		5.6
(3)
A 		3.2
(-0.7)
A 		4.6
(1.5)
A 		1.8
(-2.8)
A 		1.9
(-2.7)
A 		4
avr 2.9
(-1.4) 		3.2
(-1) 		6
(3) 		3.4
(-0.7) 		3.2
(-1) 		1.8
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 0.7
(-3)
A 		1.2
(-2)
A 		0.9
(-2.6)
A 		3.7
(3)
A 		3
B 1.2
(3)
A 		0.9
(0.4)
A 		0.5
(-3)
A 		1
(1.3)
A 		1
C 1
(-2.8)
A 		0.5
(-3)
A 		0.7
(-2.9)
A 		15.5
(3)
P 		15
avr 1
(-2.7) 		0.9
(-2.8) 		0.7
(-3) 		6.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.8
(-1.8)
A 		0.6
(-2.6)
A 		2
(3)
A 		0.7
(-2.2)
A 		1
(-1)
A 		0.5
(-3)
A 		2
B 0.9
(-1.5)
A 		0.8
(-2)
A 		1.3
(0.5)
A 		0.8
(-2)
A 		1.8
(3)
A 		0.6
(-3)
A 		1
C 0.6
(-3)
A 		1.7
(3)
A 		0.8
(-1.9)
A 		0.9
(-1.4)
A 		0.6
(-3)
A 		0.6
(-3)
A 		1
avr 0.8
(-1.5) 		1
(0) 		1.4
(3) 		0.8
(-1.5) 		1.1
(0.8) 		0.6
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184647_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10455
Sequence Type Exemplar sequence
Representative Public ID H04M03.9 NCBI
Target Description H04M03.9 /REP_DB=WormBase Gene ID /WP=CE20928 /TR=Q9TYR4 /GB=AAD12795.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068480(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068480 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-22) (srv-22) mRNA, complete cds. 11/11 None
GENEFINDER00000034810 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5878455:5881299:-1 11/11 None
H04M03.9 ENSEMBL cdna:known chromosome:CEL140:IV:5878455:5879938:-1 gene:H04M03.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5878460-5879944(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srv family
Gene Symbol srv-22
Ensembl H04M03.9
Entrez Gene 186687 Entrez gene
SwissProt Q9TYR4 EMBL-EBI
WormBase CE20928 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12795 Serpentine receptor, class v protein 22 [Caenorhabditis elegans] ref|NP_500881.1| Serpentine Receptor, class V family member (srv-22) [Caenorhabditis elegans] 1.0E-159
blast AAD12795 Serpentine receptor, class v protein 22 [Caenorhabditis elegans] ref|NP_500881.1| Serpentine Receptor, class V family member (srv-22) [Caenorhabditis elegans] 1.0E-129
blast T33863 hypothetical protein H04M03.10 - Caenorhabditis elegans 9.0E-83
blast AAA82284 Serpentine receptor, class v protein 17 [Caenorhabditis elegans] ref|NP_500876.2| Serpentine Receptor, class V family member (srv-17) [Caenorhabditis elegans] 1.0E-81
blast AAA82284 Serpentine receptor, class v protein 17 [Caenorhabditis elegans] ref|NP_500876.2| Serpentine Receptor, class V family member (srv-17) [Caenorhabditis elegans] 6.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.6E-32
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500881.1 7 26-48,61-83,98-120,150-167,195-217,238-260,270-292
H04M03.9 7 26-48,61-83,98-120,150-167,195-217,238-260,270-292
GENEFINDER00000034810 6 56-78,98-120,147-164,192-214,235-257,267-289
Sequence
Target Sequence 
>C. ELEGANS:184647_AT
gtaatattactcggttcatgcataatttgaaaccttggaaaatttctgtgatctattgga
tacctccattgtttatcagtgccgttttattctcaaatcctgaaattagatttgataccc
ctgaaagaatgattttagttatggatccaagttatatcagttgtacgacgagaaccttaa
gtgtttttgtatcaatatcatgtgtaatttgcatagttatttatggattaattgtgaaat
ttatcagagaaaatagccaatcagcaacaaaaactttccgaagagaaatccgattagcct
gccaagtatctctatcatttgccgctcagctaatctcaatgatttatttattttcctcat
ttatttttgctgaaactggtaacactgcacaaattgtgaacttaagacgatttttaccac
ttgcctatggaactatctctttcattggccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAATATTACTCGGTTCATGCATAA 285 463 419 Antisense
TTCTGTGATCTATTGGATACCTCCA 512 693 462 Antisense
ACCTCCATTGTTTATCAGTGCCGTT 115 89 480 Antisense
CAGTGCCGTTTTATTCTCAAATCCT 661 207 495 Antisense
GAAATTAGATTTGATACCCCTGAAA 638 349 520 Antisense
AGAAATCCGATTAGCCTGCCAAGTA 256 73 702 Antisense
GATTAGCCTGCCAAGTATCTCTATC 115 431 710 Antisense
TCATTTGCCGCTCAGCTAATCTCAA 151 619 733 Antisense
GCTGAAACTGGTAACACTGCACAAA 363 295 787 Antisense
AAGACGATTTTTACCACTTGCCTAT 489 153 822 Antisense
TGGAACTATCTCTTTCATTGGCCCA 150 547 846 Antisense
Sequence Source Affymetrix Proprietary Database