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[184646_at]

Description Y71A12B.N /REP_DB=WormBase Gene ID /WP=CE24594 /TR=Q9NEN4 /GB=CAB81998.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 0      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 26.5
(-2.3)
A 		16.8
(-3)
A 		67
(0.4)
A 		105.2
(3)
A 		88
B 29.3
(-0.5)
A 		8.9
(-3)
A 		56.4
(2.9)
A 		57.4
(3)
A 		49
C 44
(-2.8)
A 		42.4
(-3)
A 		68.3
(0.8)
P 		83.6
(3)
A 		41
avr 33.3
(-1.9) 		22.7
(-3) 		63.9
(1.2) 		82.1
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 43.6
(2.3)
A 		5.4
(-3)
A 		7.6
(-2.7)
A 		30.3
(0.5)
A 		48.3
(3)
A 		8.3
(-2.6)
A 		43
B 7.6
(-3)
A 		17.3
(-0.4)
A 		21.6
(0.7)
A 		30.3
(3)
A 		29.8
(2.9)
A 		21.4
(0.6)
A 		23
C 5.9
(-3)
A 		33.6
(3)
A 		8.8
(-2.4)
A 		18
(-0.4)
A 		6.7
(-2.8)
A 		21.6
(0.4)
A 		28
avr 19
(-0.6) 		18.8
(-0.7) 		12.7
(-3) 		26.2
(2.2) 		28.3
(3) 		17.1
(-1.3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 9.6
(-0.4)
A 		3.6
(-3)
A 		17.5
(3)
A 		15.4
(2.1)
A 		14
B 9.4
(1)
A 		2.2
(-3)
A 		13.1
(3)
A 		12.2
(2.5)
A 		11
C 14.6
(-1.8)
A 		12.2
(-3)
A 		23.8
(3)
P 		14.1
(-2)
A 		12
avr 11.2
(-0.4) 		6
(-3) 		18.1
(3) 		13.9
(0.9) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 8
(-0.1)
A 		1.9
(-2.9)
A 		1.7
(-3)
A 		7.7
(-0.2)
A 		14.6
(3)
A 		2
(-2.9)
A 		13
B 2.7
(-3)
A 		5.8
(-1)
A 		5.2
(-1.4)
A 		8
(0.4)
A 		12.1
(3)
A 		8
(0.4)
A 		9
C 2.2
(-3)
A 		10.3
(3)
A 		2.2
(-3)
A 		3.6
(-2)
A 		2.2
(-3)
A 		7.2
(0.7)
A 		8
avr 4.3
(-1.8) 		6
(-0.3) 		3
(-3) 		6.4
(0.1) 		9.6
(3) 		5.7
(-0.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184646_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18831
Sequence Type Exemplar sequence
Representative Public ID Y71A12B.N NCBI
Target Description Y71A12B.N /REP_DB=WormBase Gene ID /WP=CE24594 /TR=Q9NEN4 /GB=CAB81998.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061019, NM_001026632, NM_001028150
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000038398 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13969129:13977811:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010053 1/11 Cross Hyb Matching Probes None
SNAP00000010051 1/11 Cross Hyb Matching Probes None
GENEFINDER00000002055 5/11 Cross Hyb Matching Probes None
GENEFINDER00000032104 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13969059-13977742(+) 100.0 100.0
chrI:13805580-13848041(-) 82.7 82.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD92382 Hypothetical protein W09G3.7a [Caenorhabditis elegans] emb|CAH60790.1| Hypothetical protein W09G3.7a [Caenorhabditis elegans] ref|NP_001021671.1| W09G3.7a [Caenorhabditis elegans] 1.0E-127
blast T26319 hypothetical protein W09G3.3 - Caenorhabditis elegans 1.0E-127
blast CAE68015 Hypothetical protein CBG13628 [Caenorhabditis briggsae] 2.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR001357 EMBL-EBI BRCT 7.1E-5
Sequence
Target Sequence 
>C. ELEGANS:184646_AT
tgtcttgaattgtcacatccgtctctgccggcaacagctgtatgtctgcaatcaatgaag
acggccgactactcagataaatcgaaccacgcaggcaccgctccaaaccacgcaggtgac
tgcccaccacgcaggcaacgcgtcaagaccacgcaggcaaccaaaagcacgcaggtgacg
cctaggaaccacgcaggcgacttgacggtgggcagctattggcagtggctgcaaaaccac
gcaggtgacgcctacataccatgcaggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCTTGAATTGTCACATCCGTCTC 460 557 1366 Antisense
CTGCCGGCAACAGCTGTATGTCTGC 443 237 1390 Antisense
GCAATCAATGAAGACGGCCGACTAC 86 321 1413 Antisense
AGACGGCCGACTACTCAGATAAATC 262 71 1424 Antisense
AGATAAATCGAACCACGCAGGCACC 642 65 1440 Antisense
AAAAGCACGCAGGTGACGCCTAGGA 159 133 1528 Antisense
GACGCCTAGGAACCACGCAGGCGAC 453 381 1542 Antisense
CCACGCAGGCGACTTGACGGTGGGC 283 271 1554 Antisense
GACGGTGGGCAGCTATTGGCAGTGG 325 375 1569 Antisense
GGCAGTGGCTGCAAAACCACGCAGG 663 535 1586 Antisense
GTGACGCCTACATACCATGCAGGCA 380 483 1610 Antisense
Sequence Source Affymetrix Proprietary Database