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[184645_at]

Description R06A10.3 /REP_DB=WormBase Gene ID /WP=CE12516 /TR=O44745 /GB=AAB96731.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 6.1
(1)
A 		7.6
(3)
A 		5.8
(0.7)
A 		3
(-3)
A 		5
B 5.6
(-2.8)
A 		10.7
(3)
A 		5.4
(-3)
A 		7.3
(-0.8)
A 		5
C 4.1
(-1.1)
A 		2.6
(-3)
A 		7.3
(3)
A 		5.9
(1.2)
A 		5
avr 5.3
(-3) 		7
(3) 		6.2
(0.2) 		5.4
(-2.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 10.4
(3)
A 		6.1
(-0.6)
A 		3.5
(-2.8)
A 		5.9
(-0.8)
A 		3.2
(-3)
A 		4.5
(-1.9)
A 		7
B 4.2
(0.2)
A 		4.1
(0.1)
A 		7
(3)
A 		4.6
(0.6)
A 		2.2
(-1.9)
A 		1.1
(-3)
A 		6
C 6.6
(-0.8)
A 		4.6
(-1.8)
A 		2.1
(-3)
A 		6
(-1.1)
A 		14.1
(3)
A 		2.5
(-2.8)
A 		12
avr 7.1
(3) 		4.9
(0) 		4.2
(-1) 		5.5
(0.8) 		6.5
(2.2) 		2.7
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.2
(3)
A 		1.7
(1.3)
A 		1.5
(0.7)
A 		0.4
(-3)
A 		2
B 1.8
(-0.4)
A 		2.6
(3)
A 		1.2
(-3)
A 		1.6
(-1.3)
A 		1
C 1.4
(-0.9)
A 		0.8
(-3)
A 		2.5
(3)
A 		1
(-2.3)
A 		2
avr 1.8
(3) 		1.7
(2.3) 		1.7
(2.3) 		1
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.9
(1.7)
A 		2.2
(3)
A 		0.8
(-3)
A 		1.5
(-0)
A 		1
(-2.1)
A 		1.1
(-1.7)
A 		1
B 1.5
(2.1)
A 		1.4
(1.6)
A 		1.7
(3)
A 		1.2
(0.7)
A 		0.9
(-0.7)
A 		0.4
(-3)
A 		1
C 2.4
(-0.2)
A 		1.4
(-1.7)
A 		0.5
(-3)
A 		1.2
(-2)
A 		4.6
(3)
A 		0.8
(-2.6)
A 		4
avr 1.9
(1.7) 		1.7
(0.9) 		1
(-2.1) 		1.3
(-0.9) 		2.2
(3) 		0.8
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184645_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.31
Sequence Type Exemplar sequence
Representative Public ID R06A10.3 NCBI
Target Description R06A10.3 /REP_DB=WormBase Gene ID /WP=CE12516 /TR=O44745 /GB=AAB96731.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058417 NCBI Caenorhabditis elegans R06A10.3 (R06A10.3) mRNA, complete cds. 11/11 None
R06A10.3 ENSEMBL cdna:known chromosome:CEL140:I:1078426:1079236:-1 gene:R06A10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037727 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1078425-1079236(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R06A10.3
Entrez Gene 187634 Entrez gene
SwissProt O44745 EMBL-EBI
WormBase CE12516 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96731 Hypothetical protein R06A10.3 [Caenorhabditis elegans] ref|NP_490818.1| R06A10.3 [Caenorhabditis elegans] 1.0E-87
Sequence
Target Sequence 
>C. ELEGANS:184645_AT
gaagctggctcgacaccgagaacaactgaaggcaaggtatcacatcggatctggacaaga
aaggggacatcaggcagttgagaagacagcctatcggcaacgggttcaacattttcaaaa
atccagaagtccaagagggacagatggaaacggagaagatcgagacacaaatcaggatca
actcaccacgtacttcagcacaattcagtcaagcaacaacatcagcagcttctacacggc
caacgtcatggttcctgcggaaatggttcatcagtttcgcgaggagctcaagatgcggaa
accggagatccaggctatttccaagagatcggctcttaacacaaaggatattaatctgct
gacggacgccttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTGGCTCGACACCGAGAACAA 9 343 18 Antisense
GCAAGGTATCACATCGGATCTGGAC 454 321 49 Antisense
GACAGCCTATCGGCAACGGGTTCAA 386 367 102 Antisense
CAAATCAGGATCAACTCACCACGTA 455 193 185 Antisense
TCACCACGTACTTCAGCACAATTCA 660 625 200 Antisense
TTCTACACGGCCAACGTCATGGTTC 589 669 247 Antisense
ATGGTTCATCAGTTTCGCGAGGAGC 265 51 280 Antisense
GAGGAGCTCAAGATGCGGAAACCGG 8 405 298 Antisense
GAAACCGGAGATCCAGGCTATTTCC 404 357 315 Antisense
AGGCTATTTCCAAGAGATCGGCTCT 396 53 329 Antisense
TATTAATCTGCTGACGGACGCCTTG 246 661 366 Antisense
Sequence Source Affymetrix Proprietary Database