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[184644_at]

Description Y18D10A.1 /REP_DB=WormBase Gene ID /WP=CE21397 /TR=Q9XW25 /GB=CAA22308.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 91      6grp_total > 38      4grp_total > 54      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 367.2
(3)
P 		213.6
(-1.9)
P 		288.2
(0.5)
P 		178.2
(-3)
P 		189
B 320.5
(3)
P 		263.2
(1.1)
P 		205.7
(-0.8)
P 		141.1
(-3)
P 		179
C 339.4
(3)
P 		279.8
(0.5)
P 		196.9
(-3)
P 		273.4
(0.2)
P 		143
avr 342.4
(3) 		252.2
(-0.7) 		230.3
(-1.6) 		197.6
(-3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 193.4
(-0.7)
P 		270.5
(1.6)
P 		113.7
(-3)
P 		217.9
(0.1)
P 		228.2
(0.4)
P 		318.2
(3)
P 		205
B 264.6
(3)
P 		245.7
(1.1)
P 		212.8
(-2.2)
P 		207.1
(-2.8)
P 		206.3
(-2.8)
P 		204.6
(-3)
P 		60
C 268.4
(3)
P 		241.3
(0.1)
P 		239.9
(-0.1)
P 		212.5
(-3)
P 		234.4
(-0.6)
P 		216.1
(-2.6)
P 		56
avr 242.1
(2) 		252.5
(3) 		188.8
(-3) 		212.5
(-0.8) 		223
(0.2) 		246.3
(2.4) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 133.7
(3)
P 		46.4
(-1.9)
P 		75.3
(-0.3)
P 		26.1
(-3)
P 		108
B 102.2
(3)
P 		65
(-0.1)
P 		47.7
(-1.5)
P 		30.1
(-3)
P 		72
C 112.4
(3)
P 		80.5
(0.1)
P 		68.6
(-1)
P 		46.1
(-3)
P 		66
avr 116.1
(3) 		64
(-0.8) 		63.9
(-0.8) 		34.1
(-3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 35.6
(-2.1)
P 		96.2
(3)
P 		24.8
(-3)
P 		55.3
(-0.4)
P 		68.9
(0.7)
P 		77.5
(1.4)
P 		71
B 92.1
(3)
P 		81.8
(1.5)
P 		51.7
(-3)
P 		54.9
(-2.5)
P 		83.8
(1.8)
P 		76.3
(0.7)
P 		40
C 99.5
(3)
P 		73.6
(0.3)
P 		61.1
(-1.1)
P 		42.7
(-3)
P 		75.9
(0.5)
P 		72.3
(0.1)
P 		57
avr 75.7
(1.7) 		83.9
(3) 		45.9
(-3) 		51
(-2.2) 		76.2
(1.8) 		75.4
(1.7) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184644_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1572
Sequence Type Exemplar sequence
Representative Public ID Y18D10A.1 NCBI
Target Description Y18D10A.1 /REP_DB=WormBase Gene ID /WP=CE21397 /TR=Q9XW25 /GB=CAA22308.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182000(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182000 NCBI Caenorhabditis elegans Y18D10A.1 (Y18D10A.1) mRNA, complete cds. 11/11 None
SNAP00000000409 ENSEMBL cdna:SNAP chromosome:CEL140:I:12796331:12817360:-1 11/11 None
GENEFINDER00000000448 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12796331:12814667:-1 11/11 None
Y18D10A.1 ENSEMBL cdna:known chromosome:CEL140:I:12796331:12814667:-1 gene:Y18D10A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12796261-12814598(-) 98.78 100.0
Public Domain and Genome References
Gene Title
Ensembl Y18D10A.1
Entrez Gene 173148 Entrez gene
SwissProt Q9XW25 EMBL-EBI
WormBase CE21397 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22308 Hypothetical protein Y18D10A.1 [Caenorhabditis elegans] ref|NP_871800.1| Y18D10A.1 [Caenorhabditis elegans] 0.0
blast CAE63502 Hypothetical protein CBG07977 [Caenorhabditis briggsae] 1.0E-132
blast CAA22309 Hypothetical protein Y18D10A.2 [Caenorhabditis elegans] ref|NP_493240.1| Y18D10A.2 [Caenorhabditis elegans] 4.0E-56
blast AAZ14281 proteophosphoglycan 5 [Leishmania major strain Friedlin] ref|XP_843163.1| proteophosphoglycan 5 [Leishmania major] 6.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR004911 EMBL-EBI Gamma interferon inducible lysosomal thiol reductase GILT 3.0E-20
Sequence
Target Sequence 
>C. ELEGANS:184644_AT
ggattcggaacaggcaagtgccgtcaattggttgctcaacgcaaaattcgacgtcgccta
cgtggccccgcccacttcgaatgacgtcacagaagcttgtataaatgctcacaaacaatg
cattgatgatgatgacgtcacaccttctttgttgaaaaaatcgatttttttggcgaaaac
tgcggctcccgaagtgttgaatgtggctttcgattttttgaggcaaaaaatggatttaat
tgaagagcaatttttgaagccgaaagaaatggaaaaagaaccaaaacgtatcaccgcctt
cagtgtgccaacagtcgtcacaaaaatgacaaaatccgaagcggaaatgctcaaaaaaga
gtcgaaatggcagaaaaatgtgctccgagtgatgattgacaatccattttcgtcgcattc
ccacgcgatttttgcagcgttgaaacagatctcgccacaggtatcacaattacgtgaaat
catcgaatcatcggaaatcaatcaatatgttgaaatgacaggagaggatgcaatccgtga
cgcagttcaaaatctcgttgatctcatttcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTCGGAACAGGCAAGTGCCGTC 420 507 4296 Antisense
AAGTGCCGTCAATTGGTTGCTCAAC 319 159 4311 Antisense
GAAAACTGCGGCTCCCGAAGTGTTG 286 355 4470 Antisense
TGTGGCTTTCGATTTTTTGAGGCAA 688 553 4497 Antisense
CCTTCAGTGTGCCAACAGTCGTCAC 570 265 4592 Antisense
ATTGACAATCCATTTTCGTCGCATT 386 5 4690 Antisense
TCGCATTCCCACGCGATTTTTGCAG 240 601 4708 Antisense
GCAGCGTTGAAACAGATCTCGCCAC 482 313 4729 Antisense
AGATCTCGCCACAGGTATCACAATT 107 67 4742 Antisense
GGATGCAATCCGTGACGCAGTTCAA 534 511 4821 Antisense
AAATCTCGTTGATCTCATTTCAATT 688 117 4845 Antisense
Sequence Source Affymetrix Proprietary Database