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[184643_at]

Description C18B10.3 /REP_DB=WormBase Gene ID /WP=CE08297 /TR=P91075 /GB=AAK18887.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 04      6grp_cgc > 64      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 25.1
(-3)
A 		31.1
(-2.5)
A 		25.5
(-3)
A 		96.1
(3)
M 		71
B 48.5
(1)
A 		26.5
(-2.7)
A 		24.7
(-3)
A 		60.6
(3)
A 		36
C 28.4
(-0.7)
A 		7.1
(-3)
A 		25.5
(-1)
A 		62.3
(3)
A 		55
avr 34
(-1.6) 		21.6
(-3) 		25.2
(-2.6) 		73
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 6.3
(-1.7)
A 		2.1
(-3)
A 		21.5
(3)
A 		3.7
(-2.5)
A 		6.6
(-1.6)
A 		13.2
(0.4)
A 		19
B 18.8
(-1.6)
A 		26.6
(-0.4)
A 		47.4
(3)
P 		10.2
(-3)
A 		22.1
(-1.1)
A 		10.8
(-2.9)
A 		37
C 1.4
(-3)
A 		70.4
(3)
A 		2.3
(-2.9)
A 		31
(-0.4)
A 		32.3
(-0.3)
A 		6.2
(-2.6)
A 		69
avr 8.8
(-3) 		33
(3) 		23.7
(0.7) 		15
(-1.5) 		20.3
(-0.1) 		10.1
(-2.7) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 9.1
(-1.1)
A 		6.8
(-2.9)
A 		6.7
(-3)
A 		14.1
(3)
M 		7
B 15.5
(3)
A 		6.5
(-2.5)
A 		5.7
(-3)
A 		12.9
(1.4)
A 		10
C 9.4
(2.2)
A 		2
(-3)
A 		8.9
(1.9)
A 		10.5
(3)
A 		9
avr 11.3
(2) 		5.1
(-3) 		7.1
(-1.4) 		12.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.2
(-2.4)
A 		0.8
(-3)
A 		4.7
(3)
A 		0.9
(-2.8)
A 		2
(-1.2)
A 		3.2
(0.7)
A 		4
B 6.5
(-0.4)
A 		8.8
(1.2)
A 		11.5
(3)
P 		2.7
(-3)
A 		9
(1.3)
A 		4
(-2.1)
A 		9
C 0.5
(-3)
A 		21.5
(3)
A 		0.6
(-3)
A 		6.2
(-1.4)
A 		10.5
(-0.1)
A 		2.1
(-2.5)
A 		21
avr 2.7
(-3) 		10.4
(3) 		5.6
(-0.7) 		3.3
(-2.5) 		7.2
(0.5) 		3.1
(-2.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184643_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11278
Sequence Type Exemplar sequence
Representative Public ID C18B10.3 NCBI
Target Description C18B10.3 /REP_DB=WormBase Gene ID /WP=CE08297 /TR=P91075 /GB=AAK18887.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072526(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072526 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-9) (srbc-9) mRNA, complete cds. 11/11 None
C18B10.3 ENSEMBL cdna:known chromosome:CEL140:V:7491726:7493032:-1 gene:C18B10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7491726-7492402(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-9
Ensembl C18B10.3
Entrez Gene 182770 Entrez gene
SwissProt P91075 EMBL-EBI
WormBase CE38035 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18887 Serpentine receptor, class bc (class b-like) protein 9 [Caenorhabditis elegans] ref|NP_504927.2| Serpentine Receptor, class BC (class B-like) family member (srbc-9) [Caenorhabditis elegans] 1.0E-156
blast NP_503874 Serpentine Receptor, class BC (class B-like) family member (srbc-6) [Caenorhabditis elegans] gb|AAB65927.2| Hypothetical protein C36C5.3 [Caenorhabditis elegans] 1.0E-125
blast AAC27086 Serpentine receptor, class bc (class b-like) protein 2 [Caenorhabditis elegans] ref|NP_503940.2| Serpentine Receptor, class BC (class B-like) family member (srbc-2) [Caenorhabditis elegans] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 4.8E-81
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504927.2 7 15-36,49-71,86-108,120-142,177-196,220-242,247-269
C18B10.3 7 15-36,49-71,86-108,120-142,177-196,220-242,247-269
Sequence
Target Sequence 
>C. ELEGANS:184643_AT
atatcgggacttatgcccttctgttataatcctaatattggctattggattgggaatgtt
tgaaaaccttgttttgttcctattttgttctttgaataatttcgcaatgccacgaaactg
tggtgttttgcgatgcgcaattgattcgtgtttttttgatttctggacaacggatcgatc
agtagtgtttgctcttaactttgcattttccggtttactttctacaaaactgttaatttt
ccataaatcacatagacagaatacaggtggagtgaataatctagctatgattgatgctgc
caacgtattcctgggtgatttttttccgacctcaatttccaattatatagctcaatttgc
gttttccagctttaagaacattggaccatatatgtttattataaaactaattggaaacgc
agtggagtcaattttcatattgaagattttgaagaaaaaaagcgcccgtgcaagtatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCGGGACTTATGCCCTTCTGTT 384 21 24 Antisense
TATGCCCTTCTGTTATAATCCTAAT 197 657 35 Antisense
TGTTTTGTTCCTATTTTGTTCTTTG 306 561 93 Antisense
AACTGTGGTGTTTTGCGATGCGCAA 351 143 139 Antisense
GATGCGCAATTGATTCGTGTTTTTT 101 415 155 Antisense
GATTCGTGTTTTTTTGATTTCTGGA 29 433 166 Antisense
GGATCGATCAGTAGTGTTTGCTCTT 309 513 195 Antisense
GCTATGATTGATGCTGCCAACGTAT 633 301 307 Antisense
GCTCAATTTGCGTTTTCCAGCTTTA 182 303 373 Antisense
AACGCAGTGGAGTCAATTTTCATAT 673 145 439 Antisense
GAAAAAAAGCGCCCGTGCAAGTATT 24 315 477 Antisense
Sequence Source Affymetrix Proprietary Database