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[184641_at]

Description Y106G6D.2 /REP_DB=WormBase Gene ID /WP=CE19300 /TR=Q9XX62 /GB=CAA20975.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 07      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 11.6
(3)
A 		2.3
(-3)
A 		3.1
(-2.5)
A 		4.8
(-1.4)
A 		9
B 9.8
(3)
A 		2.4
(-3)
A 		6.2
(0.1)
A 		2.5
(-2.9)
A 		7
C 12.5
(0)
A 		2.8
(-3)
A 		12.5
(0)
A 		22
(3)
A 		19
avr 11.3
(3) 		2.5
(-3) 		7.3
(0.3) 		9.8
(2) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 2.9
(-2.8)
A 		1.1
(-3)
A 		14.9
(-1.2)
A 		2
(-2.9)
A 		21.6
(-0.3)
A 		46.9
(3)
P 		46
B 1.7
(-3)
A 		10.7
(-2.2)
A 		3.2
(-2.9)
A 		3.3
(-2.9)
A 		12
(-2.1)
A 		72.7
(3)
P 		71
C 2.4
(-3)
A 		16.3
(-1.6)
A 		9.6
(-2.3)
A 		2.8
(-3)
A 		21.6
(-1.1)
A 		63.3
(3)
P 		61
avr 2.3
(-3) 		9.4
(-2.3) 		9.2
(-2.3) 		2.7
(-3) 		18.4
(-1.4) 		61
(3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 4.2
(3)
A 		0.5
(-3)
A 		0.8
(-2.5)
A 		0.7
(-2.7)
A 		4
B 3.1
(3)
A 		0.6
(-2.8)
A 		1.4
(-0.9)
A 		0.5
(-3)
A 		3
C 4.1
(2.5)
A 		0.8
(-3)
A 		4.4
(3)
A 		3.7
(1.8)
A 		4
avr 3.8
(3) 		0.6
(-3) 		2.2
(0) 		1.6
(-1.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 0.5
(-2.9)
A 		0.4
(-3)
A 		3.3
(-1.4)
A 		0.5
(-2.9)
A 		6.5
(0.3)
A 		11.4
(3)
P 		11
B 0.6
(-3)
A 		3.6
(-2.3)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		4.9
(-2)
A 		27.1
(3)
P 		27
C 0.9
(-2.9)
A 		5
(-1.7)
A 		2.4
(-2.5)
A 		0.6
(-3)
A 		7
(-1.1)
A 		21.2
(3)
P 		21
avr 0.7
(-3) 		3
(-2.3) 		2.2
(-2.5) 		0.7
(-3) 		6.1
(-1.3) 		19.9
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184641_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2264
Sequence Type Exemplar sequence
Representative Public ID Y106G6D.2 NCBI
Target Description Y106G6D.2 /REP_DB=WormBase Gene ID /WP=CE19300 /TR=Q9XX62 /GB=CAA20975.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060265(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060265 NCBI Caenorhabditis elegans Y106G6D.2 (Y106G6D.2) mRNA, complete cds. 11/11 None
SNAP00000020347 ENSEMBL cdna:SNAP chromosome:CEL140:I:10119125:10119971:1 11/11 None
GENEFINDER00000020358 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10119125:10119971:1 11/11 None
Y106G6D.2 ENSEMBL cdna:known chromosome:CEL140:I:10119125:10119971:1 gene:Y106G6D.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10119055-10119902(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y106G6D.2
Entrez Gene 172875 Entrez gene
SwissProt Q9XX62 EMBL-EBI
WormBase CE19300 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20975 Hypothetical protein Y106G6D.2 [Caenorhabditis elegans] ref|NP_492666.1| Y106G6D.2 [Caenorhabditis elegans] 1.0E-131
Sequence
Target Sequence 
>C. ELEGANS:184641_AT
gagaatttctgattatggagagcatttgaatatgagtttggatgagttgaaagataaatt
caaggctgtgacacggaaaagagatacgattcgatttacggaacatttgaagaaaaaaca
agaaaaattgtataaagatttggaaagtattaaagaagattccaaaaataatacgattca
tggaaatgttcttcggtttagaagagaatatgaaaatgaagattcgaaaagaaaacttga
tgaaatgaagaatacattggatcaattgaaatctgaaaataaagcatggaagattctgtc
ggaggatgttcaatgtgaatctgatctatggaatttagttacagagaaacgaaaatctag
ttggttaactgaaaagaaaatcaacgaatacatgagtaacatgcagaaaaatcttagctc
tgctgtcaatgaattcaacacactccgtggtcaaatcagaaatgagctgaatcctgaaga
ta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAATTTCTGATTATGGAGAGCAT 357 391 165 Antisense
TAAATTCAAGGCTGTGACACGGAAA 258 571 219 Antisense
TCATGGAAATGTTCTTCGGTTTAGA 550 621 342 Antisense
AAAGCATGGAAGATTCTGTCGGAGG 491 123 445 Antisense
GGAAGATTCTGTCGGAGGATGTTCA 350 531 452 Antisense
GTTCAATGTGAATCTGATCTATGGA 32 445 472 Antisense
GAAAAATCTTAGCTCTGCTGTCAAT 455 355 570 Antisense
AGCTCTGCTGTCAATGAATTCAACA 220 81 580 Antisense
GAATTCAACACACTCCGTGGTCAAA 11 325 595 Antisense
ACACTCCGTGGTCAAATCAGAAATG 110 111 604 Antisense
AGAAATGAGCTGAATCCTGAAGATA 200 73 622 Antisense
Sequence Source Affymetrix Proprietary Database