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[184640_at]

Description F40E12.1 /REP_DB=WormBase Gene ID /WP=CE10172 /TR=O16569 /GB=AAB66046.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 3.4
(-3)
A 		55
(3)
A 		11.7
(-2)
A 		14.2
(-1.7)
A 		52
B 3.5
(-1.4)
A 		5.1
(3)
A 		2.9
(-3)
A 		5
(2.7)
A 		2
C 4.8
(-3)
A 		69.6
(3)
A 		39.4
(0.2)
A 		8
(-2.7)
A 		65
avr 3.9
(-3) 		43.2
(3) 		18
(-0.8) 		9.1
(-2.2) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 13.7
(3)
A 		1.7
(-3)
A 		7.1
(-0.3)
A 		9.6
(1)
A 		8.2
(0.3)
A 		3.2
(-2.3)
A 		12
B 5.3
(-2.5)
A 		5.7
(-2.2)
A 		5.7
(-2.2)
A 		4.5
(-3)
A 		13.6
(3)
A 		12.2
(2.1)
A 		9
C 3.6
(-2.9)
A 		29.8
(0.5)
A 		4.9
(-2.7)
A 		38.7
(1.6)
A 		49.4
(3)
A 		2.6
(-3)
A 		47
avr 7.5
(-2.5) 		12.4
(-0.8) 		5.9
(-3) 		17.6
(0.9) 		23.7
(3) 		6
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 1.2
(-3)
A 		11.9
(3)
A 		3.1
(-1.9)
A 		2.1
(-2.5)
A 		11
B 1.1
(1)
A 		1.3
(3)
A 		0.7
(-3)
A 		1.1
(1)
A 		1
C 1.6
(-2.9)
A 		20
(3)
A 		13.7
(1)
A 		1.3
(-3)
A 		19
avr 1.3
(-3) 		11.1
(3) 		5.8
(-0.2) 		1.5
(-2.9) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.5
(3)
A 		0.6
(-3)
A 		1.6
(0.2)
A 		2.4
(2.7)
A 		2.5
(3)
A 		0.8
(-2.4)
A 		2
B 1.8
(-2.2)
A 		1.9
(-2)
A 		1.4
(-2.7)
A 		1.2
(-3)
A 		5.5
(3)
A 		4.5
(1.6)
A 		4
C 1.3
(-2.8)
A 		9.1
(0.3)
A 		1.2
(-2.9)
A 		7.8
(-0.3)
A 		16
(3)
A 		0.9
(-3)
A 		15
avr 1.9
(-2.5) 		3.9
(-0.7) 		1.4
(-3) 		3.8
(-0.8) 		8
(3) 		2.1
(-2.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184640_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5707
Sequence Type Exemplar sequence
Representative Public ID F40E12.1 NCBI
Target Description F40E12.1 /REP_DB=WormBase Gene ID /WP=CE10172 /TR=O16569 /GB=AAB66046.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062195
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062195 NCBI Caenorhabditis elegans F40E12.1 (F40E12.1) mRNA, complete cds. None
F40E12.1 ENSEMBL cdna:known chromosome:CEL140:II:3617806:3618187:1 gene:F40E12.1 None
SNAP00000029603 ENSEMBL cdna:SNAP chromosome:CEL140:II:3617806:3618170:1 None
GENEFINDER00000029604 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3617806:3618615:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3616971-3618340(+) 70.53 91.85
Public Domain and Genome References
Gene Title
Ensembl F40E12.1
Entrez Gene 185536 Entrez gene
SwissProt O16569 EMBL-EBI
WormBase CE36843 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66046 Hypothetical protein F40E12.1 [Caenorhabditis elegans] ref|NP_494596.3| F40E12.1 [Caenorhabditis elegans] 2.0E-45
blast AAB66046 Hypothetical protein F40E12.1 [Caenorhabditis elegans] ref|NP_494596.3| F40E12.1 [Caenorhabditis elegans] 2.0E-40
blast AAB66046 Hypothetical protein F40E12.1 [Caenorhabditis elegans] ref|NP_494596.3| F40E12.1 [Caenorhabditis elegans] 2.0E-26
Sequence
Target Sequence 
>C. ELEGANS:184640_AT
attttcggcaagcttccgacacctttccgacacctctcgtcaacattttgccaacctttc
aacaaccattcgacatcttttcggcgaattttcgacaaatgtcgacaagctatcaaggaa
agtcgacaagctgtcggcaagtttcgtacaactttcgtcaaactttcttcatgtaaccac
tcgttccgctagtttcctccacagtttggtaagcttttgcatggaaactcactctgcaca
cgagattttggtcaaattagaagcggcctgcgaaggtgagctgccccgtttcacagagcc
aacccgcgatgctattcgggagaagcgtcaggccacagagaaggaagccatgaggcccaa
ggactccaaaaagagtcaacgaaaagctagacgcccgccaatcaagcgcccagtcgacat
ggagctgcttgctgtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTCGGCAAGCTTCCGACACCTT 283 13 129 Antisense
CTCGTCAACATTTTGCCAACCTTTC 146 233 164 Antisense
TTCAACAACCATTCGACATCTTTTC 284 685 186 Antisense
GACAAGCTGTCGGCAAGTTTCGTAC 314 365 253 Antisense
AAACTTTCTTCATGTAACCACTCGT 37 127 288 Antisense
GGAAACTCACTCTGCACACGAGATT 651 527 351 Antisense
GCCAACCCGCGATGCTATTCGGGAG 62 277 426 Antisense
TTCGGGAGAAGCGTCAGGCCACAGA 56 695 443 Antisense
GAAGCCATGAGGCCCAAGGACTCCA 137 345 472 Antisense
TCAACGAAAAGCTAGACGCCCGCCA 393 629 504 Antisense
GTCGACATGGAGCTGCTTGCTGTGC 1 475 541 Antisense
Sequence Source Affymetrix Proprietary Database