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[184639_s_at]

Description W03F9.2A /REP_DB=WormBase Gene ID /WP=CE14526 /TR=O16998 /GB=AAG24200.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      4grp_high_8_8 > 30      6grp_total > 96      4grp_total > 25      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 42.6
(-3)
A 		111.8
(-0.6)
P 		151.3
(0.8)
P 		214.4
(3)
P 		172
B 51.4
(-3)
P 		129.4
(2.9)
P 		130.3
(3)
P 		130.8
(3)
P 		79
C 71.8
(-3)
P 		114
(-1.4)
P 		97.4
(-2)
P 		225.3
(3)
P 		154
avr 55.3
(-3) 		118.4
(-0.2) 		126.3
(0.2) 		190.2
(3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 128.6
(-0.6)
P 		85.9
(-2.9)
P 		84.3
(-3)
P 		131.2
(-0.5)
P 		184.5
(2.4)
P 		195.8
(3)
P 		112
B 61.1
(-2.1)
P 		85.9
(-1.1)
P 		39.4
(-3)
A 		141.3
(1.3)
P 		159.9
(2)
P 		182.6
(3)
P 		143
C 73.3
(-3)
P 		131
(-0.7)
P 		103.3
(-1.8)
P 		131.6
(-0.7)
P 		123.6
(-1)
P 		227
(3)
P 		154
avr 87.7
(-2.4) 		100.9
(-1.8) 		75.7
(-3) 		134.7
(-0.2) 		156
(0.8) 		201.8
(3) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 15.5
(-3)
A 		24.3
(-0.8)
P 		39.6
(3)
P 		31.4
(1)
P 		24
B 16.4
(-3)
P 		32
(3)
P 		30.2
(2.3)
P 		27.9
(1.4)
P 		16
C 23.8
(-3)
P 		32.8
(0.8)
P 		33.9
(1.3)
P 		38
(3)
P 		14
avr 18.6
(-3) 		29.7
(1.2) 		34.6
(3) 		32.4
(2.2) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 23.7
(-2.1)
P 		30.5
(-1.1)
P 		18.4
(-3)
P 		33.3
(-0.6)
P 		55.7
(3)
P 		47.7
(1.7)
P 		37
B 21.2
(-1.8)
P 		28.6
(-1.1)
P 		9.6
(-3)
A 		37.4
(-0.1)
P 		65
(2.7)
P 		68.1
(3)
P 		59
C 27.2
(-2.9)
P 		40
(-1.3)
P 		26.3
(-3)
P 		26.5
(-3)
P 		40
(-1.3)
P 		76
(3)
P 		50
avr 24
(-2.2) 		33
(-1) 		18.1
(-3) 		32.4
(-1.1) 		53.6
(1.7) 		63.9
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184639_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15205
Sequence Type Exemplar sequence
Representative Public ID W03F9.2A NCBI
Target Description W03F9.2A /REP_DB=WormBase Gene ID /WP=CE14526 /TR=O16998 /GB=AAG24200.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070738(11), NM_070739(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070738 NCBI Caenorhabditis elegans W03F9.2a (W03F9.2) mRNA, complete cds. 11/11 A 
NM_070739 NCBI Caenorhabditis elegans W03F9.2b (W03F9.2) mRNA, complete cds. 11/11 None
SNAP00000001162 ENSEMBL cdna:SNAP chromosome:CEL140:V:124206:127779:-1 11/11 None
GENEFINDER00000001170 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:126917:127779:-1 11/11 None
W03F9.2a ENSEMBL cdna:known chromosome:CEL140:V:126879:127780:-1 gene:W03F9.2 11/11 A 
W03F9.2b ENSEMBL cdna:known chromosome:CEL140:V:126945:127810:-1 gene:W03F9.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016430 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:126916-127779(-) 100.0 100.0
Public Domain and Genome References
Ensembl W03F9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503138 W03F9.1 [Caenorhabditis elegans] gb|AAG24206.1| Hypothetical protein W03F9.1 [Caenorhabditis elegans] sp|O16999|ZPR1_CAEEL Zinc-finger protein ZPR1 homolog 0.0
blast CAE62365 Hypothetical protein CBG06449 [Caenorhabditis briggsae] 0.0
blast NP_503139 W03F9.2a [Caenorhabditis elegans] gb|AAG24200.1| Hypothetical protein W03F9.2a [Caenorhabditis elegans] 1.0E-138
blast NP_503139 W03F9.2a [Caenorhabditis elegans] gb|AAG24200.1| Hypothetical protein W03F9.2a [Caenorhabditis elegans] 1.0E-136
blast CAE62370 Hypothetical protein CBG06454 [Caenorhabditis briggsae] 9.0E-49
blast NP_503140 W03F9.2b [Caenorhabditis elegans] gb|AAG24208.1| Hypothetical protein W03F9.2b [Caenorhabditis elegans] 5.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR004457 EMBL-EBI Zn-finger, ZPR1 type 2.1E-101
Pfam IPR004457 EMBL-EBI Zn-finger, ZPR1 type 2.6E-96
Sequence
Target Sequence 
>C. ELEGANS:184639_S_AT
gaaaactcccaacttcatcagttcccgaattcaatccagactcctacggggaatcgattc
ccgaaaatgctccaaggcctgtctgcgaaacctgctccgtggcctggtcaacatgggcgg
catacgagttccacatgctccagactcatataatataccgcccgtttcgatgctctggat
gccggaacttgaattttcacaccgaagatgaaggaaagcaccacctggaacattttcatg
gtggcaaacctggcagttttcagctcatcaaacagacggattttgcaaaggaaaatcagt
tgatcgaatgtctggaaaatgcaaaaaccaccgagcaactcggaatttcgaaagaacgac
ttgaaaatgggctgaaaatgattgaaaaacttcaaaaaatcaagtttaaagctgtgaaag
tgcatcttccatgctgtcttcgccatgaaatgatctcaaaacacacagaaactgaaaaag
aagcgccgccacaagaaaaatcggttacaaatgctcaaaagcccggcaatccagcacttc
tgtctctggaatcccgaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAACTCCCAACTTCATCAGTTCC 392 355 128 Antisense
AGTTCCCGAATTCAATCCAGACTCC 12 65 147 Antisense
ATTCCCGAAAATGCTCCAAGGCCTG 213 5 184 Antisense
TCCGTGGCCTGGTCAACATGGGCGG 530 593 223 Antisense
CATGGGCGGCATACGAGTTCCACAT 686 209 239 Antisense
TATAATATACCGCCCGTTTCGATGC 190 659 276 Antisense
TTTCGATGCTCTGGATGCCGGAACT 361 665 292 Antisense
GGCAAACCTGGCAGTTTTCAGCTCA 458 535 370 Antisense
AAAGTGCATCTTCCATGCTGTCTTC 509 121 544 Antisense
TCAAAAGCCCGGCAATCCAGCACTT 332 629 642 Antisense
ACTTCTGTCTCTGGAATCCCGAAAC 517 103 663 Antisense
Sequence Source Affymetrix Proprietary Database