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[184638_at]

Description Y49E10.22 /REP_DB=WormBase Gene ID /WP=CE22237 /TR=Q9XTU1 /GB=CAB11556.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 20      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 88.7
(0.8)
A 		25.7
(-2.5)
A 		16.4
(-3)
A 		130
(3)
A 		114
B 82.8
(0.7)
A 		110.2
(3)
P 		37.6
(-3)
A 		93.2
(1.6)
A 		73
C 79.5
(-1.9)
A 		105.4
(-0.5)
A 		58.2
(-3)
A 		173.5
(3)
A 		115
avr 83.7
(-0.1) 		80.4
(-0.3) 		37.4
(-3) 		132.2
(3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 18.9
(-3)
A 		59
(-0.7)
A 		80.3
(0.5)
P 		67.9
(-0.2)
P 		110.2
(2.3)
A 		123.2
(3)
A 		104
B 50.2
(-2)
A 		35.4
(-3)
A 		57
(-1.5)
A 		60
(-1.3)
A 		124.2
(3)
P 		98.1
(1.2)
A 		89
C 49.1
(-3)
P 		51.1
(-2.8)
A 		87.8
(0.5)
P 		75
(-0.7)
M 		116.4
(3)
P 		111.1
(2.5)
P 		67
avr 39.4
(-3) 		48.5
(-2.3) 		75
(-0.2) 		67.6
(-0.8) 		116.9
(3) 		110.8
(2.5) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 32.3
(3)
A 		5.6
(-2.7)
A 		4.3
(-3)
A 		19
(0.2)
A 		28
B 26.4
(2.7)
A 		27.2
(3)
P 		8.7
(-3)
A 		19.9
(0.6)
A 		19
C 26.3
(0.6)
A 		30.3
(3)
A 		20.3
(-3)
A 		29.3
(2.4)
A 		10
avr 28.3
(3) 		21
(0.5) 		11.1
(-3) 		22.7
(1) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 3.5
(-3)
A 		21
(0.5)
A 		17.5
(-0.2)
P 		17.2
(-0.2)
P 		33.2
(3)
A 		30
(2.4)
A 		30
B 17.5
(-2.1)
A 		11.8
(-3)
A 		13.8
(-2.7)
A 		15.9
(-2.4)
A 		50.4
(3)
P 		36.6
(0.9)
A 		39
C 18.2
(-2.2)
P 		15.6
(-2.9)
A 		22.3
(-1.1)
P 		15.1
(-3)
M 		37.7
(3)
P 		37.2
(2.9)
P 		23
avr 13.1
(-3) 		16.1
(-2.3) 		17.9
(-1.9) 		16.1
(-2.3) 		40.4
(3) 		34.6
(1.7) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184638_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6435
Sequence Type Exemplar sequence
Representative Public ID Y49E10.22 NCBI
Target Description Y49E10.22 /REP_DB=WormBase Gene ID /WP=CE22237 /TR=Q9XTU1 /GB=CAB11556.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067226
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000016102 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12466494:12472500:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067226 8/11 Cross Hyb Matching Probes None
Y49E10.22 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12466489-12468148(+) 63.96 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T27046 hypothetical protein Y49E10.22 - Caenorhabditis elegans 1.0E-120
blast CAB11556 Hypothetical protein Y49E10.22 [Caenorhabditis elegans] ref|NP_499627.1| Y49E10.22 [Caenorhabditis elegans] 2.0E-71
blast CAE66425 Hypothetical protein CBG11694 [Caenorhabditis briggsae] 1.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000016102 1 755-772
Sequence
Target Sequence 
>C. ELEGANS:184638_AT
ttctcgaatccacgtcatttgacgatttccgtatgatgcgaacgcgctccagtgataaaa
atgcgcgccaaactcgaaaatcgttcgagtgtcacgtggaatcgtgcatttccgaatcta
catcgaaaatttacgtcatagaagacattttctatctgaaaagtaaacacggacaaacac
atttagttttacaagccgcgacgcgacacgcaacgcgccgtaaatctaccccagatatgg
ccgagccaaaatggcctagttcggcaaactcttccatttcaatttatgagggaagccaga
aatccgtggacgtattatcgcggaaaattccgaaatcgagatgcaatcgcgctccacgga
caaaagtctcgttaggtggcaaaaccagatattcgaagaaacctccaccaccatcaaaac
tcgaatctctggatgttctaacccgtcgattggtgtctgaactaatgcaaaatgataaaa
caatgaatggtcgaaaactcagtgatgctaggaagaagcttctgatagatttatctggaa
atttggaaatttcaaatgaaaacgatcccaaattcttatatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCGAATCCACGTCATTTGACGA 407 691 95 Antisense
GACGATTTCCGTATGATGCGAACGC 403 377 115 Antisense
TGCGAACGCGCTCCAGTGATAAAAA 88 585 131 Antisense
ATCGTTCGAGTGTCACGTGGAATCG 376 35 174 Antisense
GAATCGTGCATTTCCGAATCTACAT 242 329 193 Antisense
GAAATCCGTGGACGTATTATCGCGG 171 359 393 Antisense
CGAAATCGAGATGCAATCGCGCTCC 101 253 425 Antisense
CGCGCTCCACGGACAAAAGTCTCGT 47 257 442 Antisense
CCACCACCATCAAAACTCGAATCTC 459 271 499 Antisense
GTTCTAACCCGTCGATTGGTGTCTG 562 443 529 Antisense
AAAACGATCCCAAATTCTTATATGA 210 131 653 Antisense
Sequence Source Affymetrix Proprietary Database