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[184637_at]

Description Y47G6A.7 /REP_DB=WormBase Gene ID /WP=CE24373 /TR=Q9N3S9 /GB=AAF60659.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 82      6grp_total > 63      4grp_total > 03      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1057
1 2 3 4 range
A 354.9
(-2.5)
P 		317.2
(-2.7)
P 		267.8
(-3)
P 		1279.2
(3)
P 		1011
B 435.5
(-1.9)
P 		256
(-3)
P 		296.6
(-2.8)
P 		1278.7
(3)
P 		1023
C 369.7
(-2.3)
P 		248.2
(-3)
P 		250.3
(-3)
P 		1304.8
(3)
P 		1057
avr 386.7
(-2.3) 		273.8
(-3) 		271.6
(-3) 		1287.6
(3) 		1016

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 322.6
(-2.6)
P 		360.1
(-1.1)
P 		370.7
(-0.6)
P 		457.3
(3)
P 		313.4
(-3)
P 		390.3
(0.2)
P 		144
B 280.6
(-3)
P 		296.3
(-2.4)
P 		425.6
(3)
P 		406.1
(2.2)
P 		348.6
(-0.2)
P 		310.6
(-1.8)
P 		145
C 358.5
(-0.1)
P 		295.2
(-3)
P 		425.5
(3)
P 		343.5
(-0.8)
P 		355.4
(-0.2)
P 		326.7
(-1.5)
P 		130
avr 320.6
(-2.8) 		317.2
(-3) 		407.3
(3) 		402.3
(2.7) 		339.1
(-1.5) 		342.5
(-1.3) 		90
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 129.2
(0.1)
P 		68.9
(-3)
P 		70
(-2.9)
P 		187.3
(3)
P 		118
B 138.9
(-0.8)
P 		63.2
(-3)
P 		68.7
(-2.8)
P 		272.5
(3)
P 		209
C 122.4
(-0.9)
P 		71.4
(-3)
P 		87.2
(-2.4)
P 		220
(3)
P 		149
avr 130.2
(-0.6) 		67.8
(-3) 		75.3
(-2.7) 		226.6
(3) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 59.5
(-3)
P 		128.1
(3)
P 		80.7
(-1.1)
P 		116
(1.9)
P 		94.6
(0.1)
P 		95
(0.1)
P 		69
B 97.6
(-3)
P 		98.6
(-2.9)
P 		103.3
(-2.2)
P 		107.6
(-1.6)
P 		141.6
(3)
P 		115.8
(-0.5)
P 		44
C 132.9
(3)
P 		90.1
(-1)
P 		108.3
(0.7)
P 		69.1
(-3)
P 		115
(1.3)
P 		109.3
(0.8)
P 		64
avr 96.7
(-3) 		105.6
(-0.4) 		97.4
(-2.8) 		97.6
(-2.7) 		117.1
(3) 		106.7
(-0.1) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184637_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.124
Sequence Type Exemplar sequence
Representative Public ID Y47G6A.7 NCBI
Target Description Y47G6A.7 /REP_DB=WormBase Gene ID /WP=CE24373 /TR=Q9N3S9 /GB=AAF60659.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026598(11), NM_001026599(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026598 NCBI Caenorhabditis elegans Y47G6A.7a (Y47G6A.7) mRNA, complete cds. 11/11 None
NM_001026599 NCBI Caenorhabditis elegans Y47G6A.7b (Y47G6A.7) mRNA, complete cds. 11/11 None
SNAP00000033979 ENSEMBL cdna:SNAP chromosome:CEL140:I:3502928:3508311:1 11/11 None
GENEFINDER00000034095 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3503515:3508311:1 11/11 None
Y47G6A.7a.2 ENSEMBL cdna:known chromosome:CEL140:I:3502738:3508421:1 gene:Y47G6A.7 11/11 None
Y47G6A.7a.1 ENSEMBL cdna:known chromosome:CEL140:I:3502740:3508421:1 gene:Y47G6A.7 11/11 None
Y47G6A.7a.3 ENSEMBL cdna:known chromosome:CEL140:I:3502740:3508421:1 gene:Y47G6A.7 11/11 None
Y47G6A.7b ENSEMBL cdna:known chromosome:CEL140:I:3502928:3508407:1 gene:Y47G6A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3502927-3508311(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y47G6A.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001021769 Y47G6A.7a [Caenorhabditis elegans] gb|AAF60659.1| Hypothetical protein Y47G6A.7a [Caenorhabditis elegans] 0.0
blast NP_001021770 Y47G6A.7b [Caenorhabditis elegans] gb|AAT81181.1| Hypothetical protein Y47G6A.7b [Caenorhabditis elegans] 0.0
blast CAE68961 Hypothetical protein CBG14941 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021769.1 10 78-97,107-129,148-167,171-193,200-218,228-245,266-288,298-316,323-345,355-377
NP_001021770.1 10 78-97,107-129,148-167,171-193,200-218,228-245,266-288,298-316,323-345,355-377
Y47G6A.7a.2 10 78-97,107-129,148-167,171-193,200-218,228-245,266-288,298-316,323-345,355-377
Y47G6A.7a.1 10 78-97,107-129,148-167,171-193,200-218,228-245,266-288,298-316,323-345,355-377
Y47G6A.7a.3 10 78-97,107-129,148-167,171-193,200-218,228-245,266-288,298-316,323-345,355-377
Y47G6A.7b 10 78-97,107-129,148-167,171-193,200-218,228-245,266-288,298-316,323-345,355-377
SNAP00000033979 10 78-97,107-129,148-167,171-193,200-218,228-245,266-288,298-316,323-345,355-377
GENEFINDER00000034095 10 86-105,115-137,156-175,179-201,208-226,236-253,274-296,306-324,331-353,363-385
Sequence
Target Sequence 
>C. ELEGANS:184637_AT
gctttgagacgggcctgattgctgcaggcctattcctattcacttggaaatcatcacaac
ttgatttaaccgggctgatgcttgttgaacttgcggctgcatgcactggaatccgatgga
cagtttctcagatggtaatgcaaagagatgactcggcagtgagacatccattggatatgg
ttgcacatgtacagccatggatgatgattccaattattccgatgatttggttgttcgaag
gagctgagatcaattggaattccgtgttttcattcaagggacattatgatccttggcttg
tgatgggattaattgccggaggaggattgctggcgttctgtatggaaatgagtgaatacc
tgcttctcgtgaacacttctggaatcacgctaaacattttcggaattgtgaaagaagttg
cgacactcttattggcacatatcgtgaacaaggacacactaacggaactgaatatttgtg
gtttagttctttgtttgtctggaatgcttttacacggaatgaacaaacgacatcagagag
cccatcgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTTGAGACGGGCCTGATTGCTGC 60 305 620 Antisense
CAGGCCTATTCCTATTCACTTGGAA 546 209 644 Antisense
CACAACTTGATTTAACCGGGCTGAT 37 193 674 Antisense
GGCTGATGCTTGTTGAACTTGCGGC 38 541 692 Antisense
ACTTGCGGCTGCATGCACTGGAATC 397 99 708 Antisense
CTCGGCAGTGAGACATCCATTGGAT 221 233 771 Antisense
GGGACATTATGATCCTTGGCTTGTG 221 495 897 Antisense
GAGGAGGATTGCTGGCGTTCTGTAT 55 405 938 Antisense
GTGAATACCTGCTTCTCGTGAACAC 54 485 971 Antisense
GTTGCGACACTCTTATTGGCACATA 433 439 1036 Antisense
AAACGACATCAGAGAGCCCATCGCC 475 125 1144 Antisense
Sequence Source Affymetrix Proprietary Database