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[184636_at]

Description F48G7.10 /REP_DB=WormBase Gene ID /WP=CE10772 /TR=O44590 /GB=AAG24119.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 247
1 2 3 4 range
A 86.8
(0.2)
A 		15.9
(-2.9)
A 		14.2
(-3)
A 		148.8
(3)
A 		135
B 83.4
(-1.2)
A 		9.7
(-3)
A 		7.7
(-3)
A 		254.7
(3)
P 		247
C 108.4
(1.8)
A 		9.2
(-3)
A 		9.8
(-3)
A 		132.1
(3)
A 		123
avr 92.9
(-0.1) 		11.6
(-3) 		10.6
(-3) 		178.5
(3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 215.9
(-0.4)
A 		139.7
(-2.5)
M 		135.9
(-2.6)
P 		303.4
(2)
P 		340.7
(3)
P 		121.4
(-3)
P 		219
B 246.1
(-1)
P 		192.8
(-3)
M 		192
(-3)
A 		238.4
(-1.3)
P 		356.7
(3)
P 		222.4
(-1.9)
P 		165
C 219.4
(-1)
P 		172.9
(-2.2)
A 		163.3
(-2.5)
M 		257.3
(0)
P 		369.7
(3)
P 		142.6
(-3)
P 		227
avr 227.1
(-1) 		168.5
(-2.8) 		163.7
(-3) 		266.4
(0.2) 		355.7
(3) 		162.1
(-3) 		194
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 31.6
(3)
A 		3.4
(-3)
A 		3.7
(-2.9)
A 		21.8
(0.9)
A 		28
B 26.6
(-0.2)
A 		2.4
(-2.9)
A 		1.8
(-3)
A 		54.3
(3)
P 		53
C 35.9
(3)
A 		2.6
(-3)
A 		3.4
(-2.9)
A 		22.3
(0.5)
A 		33
avr 31.4
(2.7) 		2.8
(-3) 		3
(-3) 		32.8
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 39.8
(-2.2)
A 		49.7
(-1.4)
M 		29.6
(-3)
P 		76.9
(0.9)
P 		102.8
(3)
P 		29.6
(-3)
P 		73
B 85.6
(-0.6)
P 		64.2
(-1.9)
M 		46.6
(-3)
A 		63.1
(-2)
P 		144.9
(3)
P 		82.9
(-0.8)
P 		98
C 81.3
(0.1)
P 		52.8
(-2.1)
A 		41.6
(-3)
M 		51.8
(-2.2)
P 		119.6
(3)
P 		47.7
(-2.5)
P 		78
avr 68.9
(-0.9) 		55.6
(-1.8) 		39.3
(-3) 		63.9
(-1.2) 		122.4
(3) 		53.4
(-2) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184636_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15610
Sequence Type Exemplar sequence
Representative Public ID F48G7.10 NCBI
Target Description F48G7.10 /REP_DB=WormBase Gene ID /WP=CE10772 /TR=O44590 /GB=AAG24119.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070872(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070872 NCBI Caenorhabditis elegans F48G7.10 (F48G7.10) mRNA, complete cds. 11/11 None
SNAP00000037298 ENSEMBL cdna:SNAP chromosome:CEL140:V:633971:634722:-1 11/11 None
GENEFINDER00000037310 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:633081:634722:-1 11/11 None
F48G7.10 ENSEMBL cdna:known chromosome:CEL140:V:633971:634722:-1 gene:F48G7.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:633970-634722(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48G7.10
Entrez Gene 185998 Entrez gene
SwissProt O44590 EMBL-EBI
WormBase CE10772 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24119 Hypothetical protein F48G7.10 [Caenorhabditis elegans] ref|NP_503273.1| F48G7.10 [Caenorhabditis elegans] 1.0E-100
blast AAG24119 Hypothetical protein F48G7.10 [Caenorhabditis elegans] ref|NP_503273.1| F48G7.10 [Caenorhabditis elegans] 5.0E-95
blast CAB07853 Hypothetical protein R12G8.1 [Caenorhabditis elegans] ref|NP_507486.1| R12G8.1 [Caenorhabditis elegans] 2.0E-59
blast CAE61713 Hypothetical protein CBG05662 [Caenorhabditis briggsae] 3.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 1.0E-16
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 7.3E-21
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 3.6E-21
Sequence
Target Sequence 
>C. ELEGANS:184636_AT
aatccacgaaatttccgggcacaggttcaaggccacggctcttgttcagccaacctgctg
tgcaatttgctccaagttgatctacggactcggaaaacaaggctacaggtgtttgggctg
tgaaactgttgttcacaaacgctgccattccttaataaacgatcgttgcaacttcggccc
atcatctccccgccagccacctccacaagagctttccagtgattctggagagcttcggca
caggatcccatcgcccactgagccccaagtctccaccaatcatcacttcaacaagcattt
ctacacccgaccaacgttctgtgatcactgtggaagcctgctctacgggctctccaagca
aggcgttcaatgctcggattgtttggcaaatgtgcaccatcgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCACGAAATTTCCGGGCACAGG 408 165 72 Antisense
TCCGGGCACAGGTTCAAGGCCACGG 529 593 85 Antisense
AGCCAACCTGCTGTGCAATTTGCTC 63 85 119 Antisense
GCTCCAAGTTGATCTACGGACTCGG 401 287 140 Antisense
TTCACAAACGCTGCCATTCCTTAAT 80 677 203 Antisense
TAAACGATCGTTGCAACTTCGGCCC 215 625 227 Antisense
CACCTCCACAAGAGCTTTCCAGTGA 692 199 269 Antisense
GATTCTGGAGAGCTTCGGCACAGGA 189 431 292 Antisense
TTCAACAAGCATTTCTACACCCGAC 186 685 358 Antisense
TGATCACTGTGGAAGCCTGCTCTAC 479 565 393 Antisense
GTTTGGCAAATGTGCACCATCGTTG 459 451 452 Antisense
Sequence Source Affymetrix Proprietary Database