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[184635_at]

Description F38G1.2 /REP_DB=WormBase Gene ID /WP=CE26435 /GEN=egl-17 /GB=AAK68384.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_high_8_8 > 08      6grp_highest_nonorm > 90      6grp_total > 19      4grp_total > 15      6grp_cgc > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 126.6
(3)
P 		91.6
(-3)
P 		108.8
(-0.1)
P 		120.7
(2)
P 		35
B 151.6
(3)
P 		47.9
(-3)
A 		96.3
(-0.2)
P 		61.3
(-2.2)
P 		104
C 98.8
(-1.5)
P 		93
(-2)
P 		80.8
(-3)
P 		154.4
(3)
P 		74
avr 125.7
(3) 		77.5
(-3) 		95.3
(-0.8) 		112.1
(1.3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 140
(3)
P 		95.4
(-0.1)
P 		93.9
(-0.2)
P 		130.1
(2.3)
P 		113.6
(1.2)
P 		54.1
(-3)
P 		86
B 107.5
(-0.8)
P 		90.1
(-2.9)
P 		89.6
(-3)
P 		91.8
(-2.7)
P 		137.6
(3)
P 		113.6
(0)
P 		48
C 124.3
(3)
P 		109.2
(1.2)
P 		75
(-3)
P 		99.5
(-0)
P 		85.2
(-1.8)
P 		90.7
(-1.1)
P 		49
avr 123.9
(3) 		98.2
(-1.1) 		86.2
(-3) 		107.1
(0.3) 		112.1
(1.1) 		86.1
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 46.1
(3)
P 		19.9
(-2.5)
P 		28.5
(-0.7)
P 		17.7
(-3)
P 		28
B 48.3
(3)
P 		11.8
(-3)
A 		22.3
(-1.3)
P 		13.1
(-2.8)
P 		37
C 32.7
(3)
P 		26.7
(-2.4)
P 		28.2
(-1)
P 		26
(-3)
P 		7
avr 42.4
(3) 		19.5
(-2.8) 		26.3
(-1.1) 		18.9
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 25.8
(0.6)
P 		33.9
(2.9)
P 		20.4
(-1)
P 		33
(2.6)
P 		34.3
(3)
P 		13.2
(-3)
P 		21
B 37.4
(-0.3)
P 		30
(-1.6)
P 		21.8
(-3)
P 		24.3
(-2.6)
P 		55.9
(3)
P 		42.4
(0.6)
P 		34
C 46.1
(3)
P 		33.3
(0.2)
P 		19.1
(-3)
P 		20
(-2.8)
P 		27.6
(-1.1)
P 		30.3
(-0.5)
P 		27
avr 36.4
(2.1) 		32.4
(0.8) 		20.4
(-3) 		25.8
(-1.3) 		39.3
(3) 		28.6
(-0.4) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184635_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18323
Sequence Type Exemplar sequence
Representative Public ID F38G1.2 NCBI
Target Description F38G1.2 /REP_DB=WormBase Gene ID /WP=CE26435 /GEN=egl-17 /GB=AAK68384.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075706(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075706 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-17) (egl-17) mRNA, complete cds. 11/11 None
F38G1.2 ENSEMBL cdna:known chromosome:CEL140:X:489696:492274:1 gene:F38G1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:489794-492163(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol egl-17
Ensembl F38G1.2
Entrez Gene 180402 Entrez gene
SwissProt Q9Y042 EMBL-EBI
WormBase CE26435 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8083 growth factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68384 Egg laying defective protein 17 [Caenorhabditis elegans] ref|NP_508107.1| EGg Laying defective family member (egl-17) [Caenorhabditis elegans] gb|AAD00574.1| EGL-17 [Caenorhabditis elegans] 1.0E-119
blast CAE63658 Hypothetical protein CBG08160 [Caenorhabditis briggsae] 9.0E-90
blast AAN33032 EGL-17 [Caenorhabditis briggsae] 8.0E-70
Sequence
Target Sequence 
>C. ELEGANS:184635_AT
atctcggtgagacccattggcaactattcaatgaatgcagccaaggcatgttacagtcat
ttctaggctccctgaacacaaggggatatccggacaaacattgtctaaccgattggaatg
tggttggagaatgggatggaaagtttcggttacaacatgcacagtcgagaaagtttttgt
gctttaacaaaagagcaaggataactttgaggtttaatggaagcgacgccaaatgcacat
ttattgaagaagttcgggataatgggttttctcgattacggtcttcatggaaacccgaac
tttatttaggcttcaacggtcgtggtagatttcaaaatcctttatcctatcatttaaagc
caagatgttttgactggatcaagcttgtccgttatgttgcagaatccgagaaaagcgtct
gctcaactcccccaaaaccaaaattatcaccctccccacttgagcactcgtcatttgtcc
atcatgcagttcgttcaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCGGTGAGACCCATTGGCAACT 286 33 98 Antisense
GCAGCCAAGGCATGTTACAGTCATT 278 313 134 Antisense
TCATTTCTAGGCTCCCTGAACACAA 48 621 154 Antisense
GAAGCGACGCCAAATGCACATTTAT 391 343 317 Antisense
TGGGTTTTCTCGATTACGGTCTTCA 367 553 360 Antisense
TACGGTCTTCATGGAAACCCGAACT 579 647 374 Antisense
TATTTAGGCTTCAACGGTCGTGGTA 329 663 400 Antisense
GCTTGTCCGTTATGTTGCAGAATCC 247 307 480 Antisense
CGAGAAAAGCGTCTGCTCAACTCCC 111 251 504 Antisense
AGCACTCGTCATTTGTCCATCATGC 326 77 560 Antisense
GTCCATCATGCAGTTCGTTCAAATT 476 477 574 Antisense
Sequence Source Affymetrix Proprietary Database