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[184634_s_at]

Description T28A11.5 /REP_DB=WormBase Gene ID /WP=CE20110 /TR=P91518 /GB=AAC48116.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 8.7
(-2.8)
A 		7.7
(-3)
A 		23.4
(-0)
A 		39.6
(3)
A 		32
B 13.3
(-1.5)
A 		9
(-2.2)
A 		42.2
(3)
A 		4
(-3)
A 		38
C 2.8
(-3)
A 		24.7
(-0.6)
A 		20.7
(-1)
A 		57
(3)
P 		54
avr 8.3
(-3) 		13.8
(-1.7) 		28.8
(1.9) 		33.5
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 2
(-3)
A 		32.4
(0.9)
P 		19.4
(-0.8)
A 		48.9
(3)
P 		27.4
(0.2)
P 		12.8
(-1.6)
A 		47
B 24
(-2.9)
P 		24.4
(-2.8)
A 		55.4
(3)
A 		55.2
(3)
P 		40.9
(0.3)
P 		23.6
(-3)
A 		32
C 22.8
(-2.7)
P 		28
(-0.2)
A 		27.5
(-0.5)
A 		34.9
(3)
A 		31.1
(1.2)
A 		22.1
(-3)
P 		13
avr 16.3
(-3) 		28.3
(-0.6) 		34.1
(0.6) 		46.3
(3) 		33.1
(0.4) 		19.5
(-2.4) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.2
(-1)
A 		1.7
(-3)
A 		6.1
(3)
A 		5.8
(2.6)
A 		4
B 4.3
(-0.7)
A 		2.2
(-2.1)
A 		9.8
(3)
A 		0.9
(-3)
A 		9
C 0.9
(-3)
A 		7.1
(1.3)
A 		7.2
(1.3)
A 		9.6
(3)
P 		9
avr 2.8
(-3) 		3.7
(-1.9) 		7.7
(3) 		5.4
(0.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.4
(-3)
A 		11.5
(2.6)
P 		4.2
(-1.1)
A 		12.4
(3)
P 		8.3
(1)
P 		3.1
(-1.7)
A 		12
B 8.4
(-2.8)
P 		8.1
(-3)
A 		13.4
(0.7)
A 		14.6
(1.6)
P 		16.6
(3)
P 		8.8
(-2.5)
A 		9
C 8.4
(-0.3)
P 		8.6
(0.1)
A 		7
(-3)
A 		7
(-3)
A 		10.1
(3)
A 		7.4
(-2.2)
P 		3
avr 5.7
(-3) 		9.4
(0.7) 		8.2
(-0.5) 		11.3
(2.6) 		11.7
(3) 		6.4
(-2.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184634_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15169
Sequence Type Exemplar sequence
Representative Public ID T28A11.5 NCBI
Target Description T28A11.5 /REP_DB=WormBase Gene ID /WP=CE20110 /TR=P91518 /GB=AAC48116.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071500(11), NM_071525(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071500 NCBI Caenorhabditis elegans T28A11.5 (T28A11.5) mRNA, complete cds. 11/11 A 
NM_071525 NCBI Caenorhabditis elegans C17B7.4 (C17B7.4) mRNA, complete cds. 11/11 A 
SNAP00000020308 ENSEMBL cdna:SNAP chromosome:CEL140:V:3339174:3339857:1 11/11 None
T28A11.5 ENSEMBL cdna:known chromosome:CEL140:V:3270380:3271067:1 gene:T28A11.5 11/11 A 
C17B7.4 ENSEMBL cdna:known chromosome:CEL140:V:3339174:3339857:1 gene:C17B7.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028213 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3270379-3271067(+) 100.0 100.0
chrV:3339173-3339857(+) 94.19 94.19
Public Domain and Genome References
Gene Title

Ensembl T28A11.5
C17B7.4
Entrez Gene 182706 Entrez gene
189012 Entrez gene
SwissProt O45156 EMBL-EBI
P91518 EMBL-EBI
WormBase CE16852 Wormbase
CE20110 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04398 Hypothetical protein C17B7.4 [Caenorhabditis elegans] ref|NP_503926.1| C17B7.4 [Caenorhabditis elegans] 1.0E-114
blast NP_503901 T28A11.5 [Caenorhabditis elegans] gb|AAC48116.2| Hypothetical protein T28A11.5 [Caenorhabditis elegans] 1.0E-112
blast AAC04398 Hypothetical protein C17B7.4 [Caenorhabditis elegans] ref|NP_503926.1| C17B7.4 [Caenorhabditis elegans] 2.0E-98
blast NP_503901 T28A11.5 [Caenorhabditis elegans] gb|AAC48116.2| Hypothetical protein T28A11.5 [Caenorhabditis elegans] 2.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.4E-69
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 3.5E-81
Sequence
Target Sequence 
>C. ELEGANS:184634_S_AT
agtcaggaactggaacaaattgcacagaacttacctttaaaaaattcttcgtttgccttt
atgtaaatttcatggcaaaaatgtattttctggatgtgaagagtcaagatagtatgaata
aattcaaaacatcatgcctcttcatggccgactgcaccgagtctttcgagtgtcaaaata
ataaagaacctaccgactcctccaaaaaagtcagggagtcttgtgagacgctgaacttcc
tgggcacaaattttataacctgtctgacaaagttggaggaattgaaaccgtcacccgagt
gttacaagatgtggggtccgtttgatggatttatcataaaagacaagcttccggacgaat
tgtgcaaaaatatggttggaaaagacaattgcatgaagaaattggtcagcgaaacttgtg
gagaggaggactcgcgaaaattgttgaatatgctcaaaaatacaaccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCAGGAACTGGAACAAATTGCAC 351 59 98 Antisense
AATAAATTCAAAACATCATGCCTCT 636 171 214 Antisense
GACTGCACCGAGTCTTTCGAGTGTC 181 375 247 Antisense
GCACCGAGTCTTTCGAGTGTCAAAA 175 315 251 Antisense
TCTTGTGAGACGCTGAACTTCCTGG 286 617 316 Antisense
TTATAACCTGTCTGACAAAGTTGGA 612 613 350 Antisense
GTGGGGTCCGTTTGATGGATTTATC 122 489 408 Antisense
AAAAGACAAGCTTCCGGACGAATTG 466 127 435 Antisense
CAAGCTTCCGGACGAATTGTGCAAA 440 183 441 Antisense
GAAATTGGTCAGCGAAACTTGTGGA 202 361 495 Antisense
GAATATGCTCAAAAATACAACCGAA 561 323 543 Antisense
Sequence Source Affymetrix Proprietary Database