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[184633_at]

Description T28A11.5 /REP_DB=WormBase Gene ID /WP=CE20110 /TR=P91518 /GB=AAC48116.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 10.8
(-3)
A 		10.5
(-3)
A 		22.4
(-1.9)
A 		77
(3)
A 		67
B 9.1
(-2.7)
A 		46.3
(2)
A 		6.4
(-3)
A 		54.3
(3)
A 		48
C 8
(-1.9)
A 		32.7
(3)
A 		2.4
(-3)
A 		3.8
(-2.7)
A 		30
avr 9.3
(-3) 		29.8
(0.4) 		10.4
(-2.8) 		45
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 14.5
(-2.1)
A 		28.1
(-0.6)
A 		7
(-3)
A 		39.3
(0.7)
A 		31.8
(-0.1)
A 		58.9
(3)
A 		52
B 19.9
(-0.5)
A 		45.6
(3)
A 		8.1
(-2.1)
A 		1.5
(-3)
A 		8.2
(-2.1)
A 		8.7
(-2)
A 		44
C 4.2
(-2.9)
A 		35
(1)
A 		25.3
(-0.2)
A 		51.5
(3)
A 		6.5
(-2.6)
A 		3.1
(-3)
A 		48
avr 12.9
(-3) 		36.2
(3) 		13.5
(-2.8) 		30.8
(1.6) 		15.5
(-2.3) 		23.6
(-0.2) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.9
(-1.9)
A 		2.3
(-3)
A 		5.9
(-0.6)
A 		11.3
(3)
A 		9
B 2.9
(-2.2)
A 		11.4
(2.9)
A 		1.5
(-3)
A 		11.6
(3)
A 		10
C 2.7
(-1.6)
A 		9.4
(3)
A 		0.8
(-2.9)
A 		0.6
(-3)
A 		9
avr 3.2
(-2.4) 		7.7
(2.9) 		2.7
(-3) 		7.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.7
(-2.4)
A 		10
(1)
A 		1.5
(-3)
A 		10
(1)
A 		9.6
(0.8)
A 		14.3
(3)
A 		13
B 6.9
(-0.4)
A 		15.2
(3)
A 		2
(-2.4)
A 		0.4
(-3)
A 		3.3
(-1.8)
A 		3.2
(-1.9)
A 		15
C 1.6
(-2.6)
A 		10.7
(3)
A 		6.4
(0.3)
A 		10.4
(2.8)
A 		2.1
(-2.3)
A 		1
(-3)
A 		10
avr 3.7
(-2.7) 		12
(3) 		3.3
(-3) 		6.9
(-0.5) 		5
(-1.8) 		6.2
(-1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184633_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15169
Sequence Type Exemplar sequence
Representative Public ID T28A11.5 NCBI
Target Description T28A11.5 /REP_DB=WormBase Gene ID /WP=CE20110 /TR=P91518 /GB=AAC48116.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071500(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071500 NCBI Caenorhabditis elegans T28A11.5 (T28A11.5) mRNA, complete cds. 11/11 A 
T28A11.5 ENSEMBL cdna:known chromosome:CEL140:V:3270380:3271067:1 gene:T28A11.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3270379-3271067(+) 100.0 100.0
chrV:3339173-3339857(+) 94.19 94.19
Public Domain and Genome References
Gene Title
Ensembl T28A11.5
Entrez Gene 189012 Entrez gene
SwissProt P91518 EMBL-EBI
WormBase CE20110 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503901 T28A11.5 [Caenorhabditis elegans] gb|AAC48116.2| Hypothetical protein T28A11.5 [Caenorhabditis elegans] 1.0E-112
blast AAC04398 Hypothetical protein C17B7.4 [Caenorhabditis elegans] ref|NP_503926.1| C17B7.4 [Caenorhabditis elegans] 2.0E-98
blast NP_503895 T28A11.16 [Caenorhabditis elegans] gb|AAC48125.1| Hypothetical protein T28A11.16 [Caenorhabditis elegans] 2.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.4E-69
Sequence
Target Sequence 
>C. ELEGANS:184633_AT
atgaggtgtcttaccattctcggagcagtcctccttgcactagcttatggatccatcccg
aacagtaaaacaagtatatatatcgagtcaggaactggaacaaattgcacagaacttacc
tttaaaaaattcttcgtttgcctttatgtaaatttcatggcaaaaatgtattttctggat
gtgaagagtcaagatagtatgaataaattcaaaacatcatgcctcttcatggccgactgc
accgagtctttcgagtgtcaaaataataaagaacctaccgactcctccaaaaaagtcagg
gagtcttgtgagacgctgaacttcctgggcacaaattttataacctgtctgacaaagttg
gaggaattgaaaccgtcacccgagtgttacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGGTGTCTTACCATTCTCGGAG 77 45 13 Antisense
TGTCTTACCATTCTCGGAGCAGTCC 132 559 19 Antisense
CCTTGCACTAGCTTATGGATCCATC 463 269 45 Antisense
AGCTTATGGATCCATCCCGAACAGT 299 79 54 Antisense
GGATCCATCCCGAACAGTAAAACAA 241 513 61 Antisense
CAAGTATATATATCGAGTCAGGAAC 614 183 83 Antisense
CAAATTGCACAGAACTTACCTTTAA 367 193 113 Antisense
TCTTCGTTTGCCTTTATGTAAATTT 250 617 143 Antisense
GTATTTTCTGGATGTGAAGAGTCAA 205 453 180 Antisense
TGGAGGAATTGAAACCGTCACCCGA 446 549 371 Antisense
GAAACCGTCACCCGAGTGTTACAAG 444 357 381 Antisense
Sequence Source Affymetrix Proprietary Database