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[184631_at]

Description Y106G6D.1 /REP_DB=WormBase Gene ID /WP=CE19299 /TR=Q9XX63 /GB=CAA20974.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 05      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 18.4
(-0.8)
A 		26.4
(0.5)
M 		5.1
(-3)
A 		42
(3)
A 		37
B 34.9
(3)
P 		16.7
(-3)
A 		28.2
(0.8)
A 		27.9
(0.7)
A 		18
C 33.1
(0.6)
A 		5.1
(-3)
A 		21.5
(-0.9)
M 		52
(3)
A 		47
avr 28.8
(0.1) 		16.1
(-3) 		18.3
(-2.5) 		40.6
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 41.9
(-0.2)
M 		63.7
(1.8)
P 		34
(-1)
A 		41.3
(-0.3)
A 		12.6
(-3)
A 		76.4
(3)
P 		64
B 65.9
(3)
P 		21.7
(-3)
A 		29.2
(-2)
A 		28.2
(-2.1)
A 		31.2
(-1.7)
M 		53
(1.2)
P 		44
C 53
(2.1)
P 		52
(2)
P 		1.4
(-3)
A 		4.6
(-2.7)
A 		6.2
(-2.5)
A 		61.7
(3)
P 		60
avr 53.6
(1.7) 		45.8
(0.7) 		21.5
(-2.4) 		24.7
(-2) 		16.7
(-3) 		63.7
(3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.7
(3)
A 		5.7
(1.9)
M 		1.3
(-3)
A 		6.2
(2.4)
A 		5
B 11.1
(3)
P 		4.1
(-3)
A 		6.5
(-0.9)
A 		5.9
(-1.5)
A 		7
C 11
(3)
A 		1.5
(-3)
A 		7.5
(0.8)
M 		8.8
(1.6)
A 		10
avr 9.6
(3) 		3.8
(-3) 		5.1
(-1.7) 		7
(0.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 7.7
(-1.8)
M 		22.7
(3)
P 		7.4
(-1.9)
A 		10.5
(-0.9)
A 		3.8
(-3)
A 		18.6
(1.7)
P 		19
B 22.9
(3)
P 		7.2
(-3)
A 		7.1
(-3)
A 		7.5
(-2.8)
A 		12.7
(-0.9)
M 		19.8
(1.8)
P 		16
C 19.7
(2.7)
P 		15.9
(1.6)
P 		0.4
(-3)
A 		0.9
(-2.9)
A 		2
(-2.5)
A 		20.7
(3)
P 		20
avr 16.8
(1.8) 		15.3
(1.2) 		5
(-3) 		6.3
(-2.5) 		6.2
(-2.5) 		19.7
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184631_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2154
Sequence Type Exemplar sequence
Representative Public ID Y106G6D.1 NCBI
Target Description Y106G6D.1 /REP_DB=WormBase Gene ID /WP=CE19299 /TR=Q9XX63 /GB=CAA20974.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060264(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060264 NCBI Caenorhabditis elegans Y106G6D.1 (Y106G6D.1) mRNA, complete cds. 11/11 None
GENEFINDER00000020360 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10115597:10116868:-1 11/11 None
Y106G6D.1 ENSEMBL cdna:known chromosome:CEL140:I:10115597:10116868:-1 gene:Y106G6D.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020346 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10115527-10116799(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y106G6D.1
Entrez Gene 190915 Entrez gene
SwissProt Q9XX63 EMBL-EBI
WormBase CE19299 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20974 Hypothetical protein Y106G6D.1 [Caenorhabditis elegans] ref|NP_492665.1| Y106G6D.1 [Caenorhabditis elegans] 1.0E-154
Sequence
Target Sequence 
>C. ELEGANS:184631_AT
actcattgttaacatcagttggctagagactgaactggaaggacgaaaggctgaatcaat
tcacaaagaaacgatttgtctgagagcagaaaacaagcataggttgcaactccaggaagt
agaaaaagagatgaagaagatggagatggaaatcaagttctatcaaaatgaaaatttctc
attgagaagaatgatgatggaaacaacacttccagagcagcagccagcattgaaagagtt
gttcaaaatgacattgaaactggatactttggagaacaatttctacgaatcaagaaaatc
gattaatacgaaactgatcaattacatggaggaatgcaaacttctgcaagaattgaaaga
tgagatgctcacccaaaaaggatttctccattcaatcgccaaaaagaaacaaactgaaga
tgacacctcttgtaacttttttgtaaactctcaatttccatccaccaatttctcgttccc
tgccagcaacgtccatgagttagagtggaggtatatcatgaaatctttgaaccaaagagt
tcatcataagctctaccaacgaataactcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCATTGTTAACATCAGTTGGCTA 307 101 273 Antisense
GGCTAGAGACTGAACTGGAAGGACG 228 539 293 Antisense
AGGACGAAAGGCTGAATCAATTCAC 131 55 312 Antisense
AGCATAGGTTGCAACTCCAGGAAGT 297 77 368 Antisense
GAAACAACACTTCCAGAGCAGCAGC 610 355 472 Antisense
GATGCTCACCCAAAAAGGATTTCTC 402 413 636 Antisense
GGATTTCTCCATTCAATCGCCAAAA 593 509 652 Antisense
GATGACACCTCTTGTAACTTTTTTG 589 411 691 Antisense
CTGCCAGCAACGTCCATGAGTTAGA 7 237 752 Antisense
GAGTTCATCATAAGCTCTACCAACG 105 399 809 Antisense
TAAGCTCTACCAACGAATAACTCGG 102 637 819 Antisense
Sequence Source Affymetrix Proprietary Database