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[184630_at]

Description C18B10.6 /REP_DB=WormBase Gene ID /WP=CE08300 /TR=P91071 /GB=AAK18888.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 9.5
(-2.4)
A 		8.9
(-3)
A 		15.2
(3)
A 		11.7
(-0.3)
A 		6
B 10.7
(-0.1)
A 		15.3
(3)
A 		10.4
(-0.3)
A 		6.5
(-3)
A 		9
C 14.3
(0.8)
A 		11.7
(-0.3)
A 		5.1
(-3)
A 		19.5
(3)
A 		14
avr 11.5
(0.3) 		12
(1.5) 		10.2
(-3) 		12.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 13.8
(-1.5)
A 		18.2
(-0.8)
A 		25.3
(0.3)
A 		42.5
(3)
A 		11
(-2)
A 		4.6
(-3)
A 		38
B 13.9
(-2)
A 		8.1
(-2.8)
A 		16.8
(-1.6)
A 		7.1
(-2.9)
A 		50.9
(3)
A 		6.6
(-3)
A 		44
C 14
(0)
A 		10.3
(-1.2)
A 		23.2
(3)
A 		6.7
(-2.4)
A 		14.3
(0.1)
A 		4.7
(-3)
A 		19
avr 13.9
(-0.4) 		12.2
(-0.9) 		21.8
(1.9) 		18.8
(1) 		25.4
(3) 		5.3
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3.5
(1.7)
A 		1.9
(-2.5)
A 		4
(3)
A 		1.7
(-3)
A 		2
B 3.4
(2)
A 		3.8
(3)
A 		2.4
(-0.5)
A 		1.4
(-3)
A 		2
C 4.7
(3)
A 		3.4
(0.3)
A 		1.8
(-3)
A 		3.3
(0.1)
A 		3
avr 3.9
(3) 		3
(0) 		2.7
(-1) 		2.1
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.5
(-2.1)
A 		6.5
(0.3)
A 		5.5
(-0.3)
A 		10.8
(3)
A 		3.3
(-1.6)
A 		1.1
(-3)
A 		10
B 4.8
(-2.1)
A 		2.7
(-2.7)
A 		4.1
(-2.3)
A 		1.9
(-3)
A 		20.7
(3)
A 		2.5
(-2.8)
A 		19
C 5.2
(2.1)
A 		3.2
(-0.6)
A 		5.9
(3)
A 		1.4
(-3)
A 		4.6
(1.3)
A 		1.6
(-2.7)
A 		5
avr 4.2
(-1.1) 		4.1
(-1.2) 		5.2
(-0.3) 		4.7
(-0.7) 		9.5
(3) 		1.7
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184630_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11931
Sequence Type Exemplar sequence
Representative Public ID C18B10.6 NCBI
Target Description C18B10.6 /REP_DB=WormBase Gene ID /WP=CE08300 /TR=P91071 /GB=AAK18888.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072523(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072523 NCBI Caenorhabditis elegans C18B10.6 (C18B10.6) mRNA, complete cds. 11/11 None
SNAP00000031943 ENSEMBL cdna:SNAP chromosome:CEL140:V:7481881:7483516:-1 11/11 None
GENEFINDER00000031947 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7481881:7483516:-1 11/11 None
C18B10.6 ENSEMBL cdna:known chromosome:CEL140:V:7481881:7483641:-1 gene:C18B10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7481881-7483642(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18B10.6
Entrez Gene 182773 Entrez gene
SwissProt P91071 EMBL-EBI
WormBase CE08300 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18888 Hypothetical protein C18B10.6 [Caenorhabditis elegans] ref|NP_504924.1| C18B10.6 [Caenorhabditis elegans] 0.0
blast CAE57778 Hypothetical protein CBG00800 [Caenorhabditis briggsae] 1.0E-159
blast CAE57778 Hypothetical protein CBG00800 [Caenorhabditis briggsae] 1.0E-141
blast CAE72165 Hypothetical protein CBG19266 [Caenorhabditis briggsae] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 6.6E-9
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 6.6E-9
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 6.6E-9
Sequence
Target Sequence 
>C. ELEGANS:184630_AT
tttccttggcgcagctggagttgaatcaattcttgataatcttcgaaaatcattgtcctt
ctgcgagacttccaaagtagagaagcttattgatatttaccgtcattatatcaagattgt
gagcaagttttcgaaaattgatgaaatacttggttttcacttggtaccaaatcacggaga
tttgtggcaatcgaatatgctttttaataccgaggaaagtggacatttgaagttgaaagc
tttaattgactggcaggctgttgcgaatttgccgcccggatttgatatggttagactgtt
cataggagcattgtcaattgaggaccgtcgccagcgagcttcagagtttctgaaaatcta
tcacgaaacttttaccacagtcttcggtagtgaactatttccatatcaagaaatccatga
ttcgtacaaattgcattttccactaaaatcattgatggttctacccggaatcgcaacatt
tttggattccagccaacactcagaatctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCTTGGCGCAGCTGGAGTTGAA 363 669 702 Antisense
TTCGAAAATCATTGTCCTTCTGCGA 710 695 743 Antisense
GTCCTTCTGCGAGACTTCCAAAGTA 452 475 756 Antisense
GCAGGCTGTTGCGAATTTGCCGCCC 303 311 954 Antisense
TTTGCCGCCCGGATTTGATATGGTT 187 661 969 Antisense
TTGTCAATTGAGGACCGTCGCCAGC 396 707 1012 Antisense
TCACGAAACTTTTACCACAGTCTTC 344 627 1062 Antisense
ACCACAGTCTTCGGTAGTGAACTAT 207 85 1075 Antisense
TTGATGGTTCTACCCGGAATCGCAA 21 705 1153 Antisense
ATCGCAACATTTTTGGATTCCAGCC 2 37 1171 Antisense
ATTCCAGCCAACACTCAGAATCTGA 482 7 1187 Antisense
Sequence Source Affymetrix Proprietary Database