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[184626_at]

Description ZC404.10 /REP_DB=WormBase Gene ID /WP=CE07600 /TR=Q23292 /GB=AAA97968.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 7.1
(-3)
A 		26.3
(-1.2)
A 		17.5
(-2)
A 		72.5
(3)
P 		65
B 9.4
(-3)
A 		33.2
(-0)
A 		35.2
(0.2)
A 		57.7
(3)
M 		48
C 23.9
(-1.3)
A 		29.5
(-0.8)
A 		5.5
(-3)
A 		71.9
(3)
P 		66
avr 13.5
(-3) 		29.7
(-1.2) 		19.4
(-2.3) 		67.4
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 31.3
(2.2)
A 		8.4
(-2.6)
A 		31.7
(2.3)
A 		6.3
(-3)
A 		35.1
(3)
A 		24.9
(0.9)
A 		29
B 30.5
(-0.2)
A 		41.9
(1.6)
A 		32.4
(0.1)
A 		50.8
(3)
A 		13.9
(-2.8)
A 		12.4
(-3)
A 		38
C 2.5
(-3)
A 		31.9
(1.3)
A 		33.5
(1.5)
A 		44
(3)
A 		35.8
(1.8)
A 		16.7
(-0.9)
A 		42
avr 21.4
(-1.7) 		27.4
(0.6) 		32.5
(2.5) 		33.7
(3) 		28.3
(0.9) 		18
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.6
(-3)
A 		5.7
(-0.7)
A 		4.6
(-1.5)
A 		10.6
(3)
P 		8
B 3
(-3)
A 		8.2
(0.4)
A 		8.2
(0.4)
A 		12.3
(3)
M 		9
C 7.9
(0.5)
A 		8.5
(0.9)
A 		1.9
(-3)
A 		12.1
(3)
P 		10
avr 4.5
(-3) 		7.5
(-0.5) 		4.9
(-2.7) 		11.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.8
(-0.2)
A 		3
(-2.1)
A 		6.9
(0.5)
A 		1.6
(-3)
A 		10.6
(3)
A 		6.1
(0)
A 		9
B 10.6
(0.8)
A 		14
(3)
A 		7.9
(-0.9)
A 		13.5
(2.7)
A 		5.7
(-2.3)
A 		4.6
(-3)
A 		9
C 0.9
(-3)
A 		9.7
(1.9)
A 		8.5
(1.3)
A 		8.8
(1.4)
A 		11.6
(3)
A 		5.6
(-0.4)
A 		11
avr 5.8
(-2.4) 		8.9
(2.4) 		7.8
(0.7) 		8
(1) 		9.3
(3) 		5.4
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184626_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12146
Sequence Type Exemplar sequence
Representative Public ID ZC404.10 NCBI
Target Description ZC404.10 /REP_DB=WormBase Gene ID /WP=CE07600 /TR=Q23292 /GB=AAA97968.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072323(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072323 NCBI Caenorhabditis elegans ZC404.10 (ZC404.10) mRNA, complete cds. 11/11 None
GENEFINDER00000042522 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6800745:6804544:-1 11/11 None
ZC404.10 ENSEMBL cdna:known chromosome:CEL140:V:6803318:6804544:-1 gene:ZC404.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042521 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6803318-6804545(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC404.10
Entrez Gene 191157 Entrez gene
SwissProt Q23292 EMBL-EBI
WormBase CE07600 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL11103 Hypothetical protein ZC404.13 [Caenorhabditis elegans] ref|NP_504723.1| ZC404.13 [Caenorhabditis elegans] 0.0
blast AAA97968 Hypothetical protein ZC404.10 [Caenorhabditis elegans] ref|NP_504724.1| ZC404.10 [Caenorhabditis elegans] 1.0E-157
blast AAA97968 Hypothetical protein ZC404.10 [Caenorhabditis elegans] ref|NP_504724.1| ZC404.10 [Caenorhabditis elegans] 1.0E-156
blast CAE71956 Hypothetical protein CBG19025 [Caenorhabditis briggsae] 1.0E-110
blast AAL11103 Hypothetical protein ZC404.13 [Caenorhabditis elegans] ref|NP_504723.1| ZC404.13 [Caenorhabditis elegans] 4.0E-85
blast AAA97969 Hypothetical protein ZC404.11 [Caenorhabditis elegans] ref|NP_504725.1| ZC404.11 [Caenorhabditis elegans] 8.0E-73
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504724.1 6 43-65,72-94,119-141,158-180,210-232,265-287
ZC404.10 6 43-65,72-94,119-141,158-180,210-232,265-287
GENEFINDER00000042522 13 43-65,72-94,119-141,158-180,210-232,265-287,367-389,396-418,447-469,482-504,537-559,594-616,626-648
Sequence
Target Sequence 
>C. ELEGANS:184626_AT
gactatttccaaatttcctttcacgcggcatccttatatcttgccttgggtatggctttt
tgtagagtcgttgcaatgagttcaagaactgatagtcgttacacgtggcaatctcctaaa
tattctttgcgaatagccttattactatgcattcctgtattcatctttggttctcataat
gtgcttctaaatcacgttgaaattgaaaatgggacaattgtgctaaatatttcgccttta
tcgttagctaacagttgtttgtttttgaaacttgcaatttttttgaatggattgtttttc
aagattgtcccctgcattctaatgatggtcctctctttcgttatcttagcccgtatgaaa
tccgggaaaaaagccagcaatacaaattctggtaaccatatagacgctcaaattgtccga
tcttcccgctttattcaagctgttattgtcgtttttgttatcacagaagccccgcaagga
gttttgagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTATTTCCAAATTTCCTTTCACG 583 371 364 Antisense
TTCACGCGGCATCCTTATATCTTGC 530 687 383 Antisense
GTTACACGTGGCAATCTCCTAAATA 190 447 461 Antisense
TTCCTGTATTCATCTTTGGTTCTCA 525 699 515 Antisense
ATTTCGCCTTTATCGTTAGCTAACA 148 11 592 Antisense
TGTTTTTCAAGATTGTCCCCTGCAT 599 561 656 Antisense
TTCTAATGATGGTCCTCTCTTTCGT 598 689 680 Antisense
TCTCTTTCGTTATCTTAGCCCGTAT 53 587 695 Antisense
GATCTTCCCGCTTTATTCAAGCTGT 197 419 782 Antisense
GTTTTTGTTATCACAGAAGCCCCGC 631 447 814 Antisense
GAAGCCCCGCAAGGAGTTTTGAGTC 72 345 829 Antisense
Sequence Source Affymetrix Proprietary Database