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[184625_at]

Description F58E1.13 /REP_DB=WormBase Gene ID /WP=CE11396 /TR=Q9TZF9 /GB=AAC67476.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 48      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 2.5
(-3)
A 		12.2
(-1.2)
A 		35.7
(3)
A 		5.1
(-2.5)
A 		33
B 2.3
(-3)
A 		4.9
(1.9)
A 		2.8
(-2.1)
A 		5.5
(3)
A 		3
C 3.7
(-1.2)
A 		6.1
(3)
A 		5.6
(2.1)
A 		2.7
(-3)
A 		3
avr 2.8
(-3) 		7.7
(-0.5) 		14.7
(3) 		4.4
(-2.2) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 4.4
(3)
A 		2.6
(-3)
A 		3
(-1.7)
A 		4.4
(3)
A 		3.8
(1)
A 		3
(-1.7)
A 		2
B 2.3
(-3)
A 		2.3
(-3)
A 		2.6
(-1.4)
A 		3.4
(3)
A 		3.2
(1.9)
A 		3.1
(1.4)
A 		1
C 4.4
(0.9)
A 		3.3
(-1.5)
A 		4.1
(0.2)
A 		5.4
(3)
A 		3.5
(-1.1)
A 		2.6
(-3)
A 		3
avr 3.7
(0.5) 		2.7
(-3) 		3.2
(-1.2) 		4.4
(3) 		3.5
(-0.2) 		2.9
(-2.3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.9
(-2.9)
A 		2.6
(-1.7)
A 		9.3
(3)
A 		0.7
(-3)
A 		9
B 0.7
(-3)
A 		1.2
(3)
A 		0.7
(-3)
A 		1.2
(3)
A 		1
C 1.2
(-0.2)
A 		1.8
(2.2)
A 		2
(3)
A 		0.5
(-3)
A 		2
avr 0.9
(-2.8) 		1.9
(-0.9) 		4
(3) 		0.8
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.8
(-1.5)
A 		0.9
(0)
A 		0.7
(-3)
A 		1.1
(3)
A 		1.1
(3)
A 		0.7
(-3)
A 		0
B 0.8
(-1.3)
A 		0.8
(-1.3)
A 		0.6
(-3)
A 		0.9
(-0.4)
A 		1.3
(3)
A 		1.2
(2.1)
A 		1
C 1.6
(3)
A 		1
(-2.1)
A 		1
(-2.1)
A 		1.1
(-1.3)
A 		1.1
(-1.3)
A 		0.9
(-3)
A 		1
avr 1.1
(1.5) 		0.9
(-1.5) 		0.8
(-3) 		1
(0) 		1.2
(3) 		0.9
(-1.5) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184625_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4301
Sequence Type Exemplar sequence
Representative Public ID F58E1.13 NCBI
Target Description F58E1.13 /REP_DB=WormBase Gene ID /WP=CE11396 /TR=Q9TZF9 /GB=AAC67476.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061645(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061645 NCBI Caenorhabditis elegans F58E1.13 (F58E1.13) mRNA, complete cds. 10/11 None
SNAP00000040831 ENSEMBL cdna:SNAP chromosome:CEL140:II:1693299:1695851:-1 10/11 None
GENEFINDER00000040840 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1693299:1695851:-1 11/11 None
F58E1.13 ENSEMBL cdna:known chromosome:CEL140:II:1694857:1695830:-1 gene:F58E1.13 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1694855-1695850(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58E1.13
Entrez Gene 186517 Entrez gene
SwissProt Q9TZF9 EMBL-EBI
WormBase CE36172 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67485 Hypothetical protein F58E1.12 [Caenorhabditis elegans] ref|NP_494045.1| F58E1.12 [Caenorhabditis elegans] 0.0
blast AAB66198 Hypothetical protein K09F6.8 [Caenorhabditis elegans] ref|NP_494228.1| K09F6.8 [Caenorhabditis elegans] 6.0E-95
blast AAB66198 Hypothetical protein K09F6.8 [Caenorhabditis elegans] ref|NP_494228.1| K09F6.8 [Caenorhabditis elegans] 7.0E-95
blast AAC67476 Hypothetical protein F58E1.13 [Caenorhabditis elegans] ref|NP_494046.2| F58E1.13 [Caenorhabditis elegans] 3.0E-51
blast AAC67476 Hypothetical protein F58E1.13 [Caenorhabditis elegans] ref|NP_494046.2| F58E1.13 [Caenorhabditis elegans] 3.0E-46
blast AAB66237 Hypothetical protein R07C3.7 [Caenorhabditis elegans] ref|NP_493850.1| R07C3.7 [Caenorhabditis elegans] 4.0E-42
blast AAC68762 Hypothetical protein C40A11.7 [Caenorhabditis elegans] ref|NP_494199.1| C40A11.7 [Caenorhabditis elegans] 3.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 2.7E-5
Sequence
Target Sequence 
>C. ELEGANS:184625_AT
acacactgagttcgatttctggtattatcgattctacaatggaaactatgatttgcacta
cgacagaagctccgatcccatcatgcactccctgtcggaaatgccgattgtcctagtgat
caactatatcacgcacaataacgagttgatctacaccccacagggcctcaaattttcgaa
attcgtcgccaataaccagaataaagtcgacatttatattagtaagttgggggaggaaac
cgtaagcgagaagcccgaattcgacatcacacatccgactccatgctggagcttccgtgt
ctacaacagttcgtactcgggattctactggctggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACACTGAGTTCGATTTCTGGTAT 106 111 141 Antisense
TGCACTCCCTGTCGGAAATGCCGAT 554 575 224 Antisense
ATGCCGATTGTCCTAGTGATCAACT 526 41 241 Antisense
AATAACGAGTTGATCTACACCCCAC 513 169 277 Antisense
CCACAGGGCCTCAAATTTTCGAAAT 219 273 298 Antisense
TCGAAATTCGTCGCCAATAACCAGA 53 601 316 Antisense
GAAACCGTAAGCGAGAAGCCCGAAT 346 355 376 Antisense
GAATTCGACATCACACATCCGACTC 224 325 397 Antisense
ACATCCGACTCCATGCTGGAGCTTC 294 105 411 Antisense
TGTCTACAACAGTTCGTACTCGGGA 62 559 438 Antisense
GTACTCGGGATTCTACTGGCTGGAG 664 457 453 Antisense
Sequence Source Affymetrix Proprietary Database