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[184623_at]

Description K01A2.10 /REP_DB=WormBase Gene ID /WP=CE19519 /TR=Q9TZ50 /GB=AAC69509.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 69      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 74      6grp_total > 89      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1802
1 2 3 4 range
A 1077.2
(-0.6)
P 		609.9
(-2.1)
P 		354.7
(-3)
P 		2138.9
(3)
P 		1784
B 1089.5
(-0.3)
P 		560.1
(-2.3)
P 		359.1
(-3)
P 		1998.7
(3)
P 		1640
C 1004.6
(-0)
P 		472.8
(-2.4)
P 		337.4
(-3)
P 		1690.6
(3)
P 		1353
avr 1057.1
(-0.3) 		547.6
(-2.3) 		350.4
(-3) 		1942.7
(3) 		1592

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 729.2
(1.4)
P 		695.2
(0.5)
P 		563.6
(-3)
P 		674.2
(-0)
P 		788.4
(3)
P 		719.2
(1.2)
P 		225
B 709.1
(-3)
P 		769.4
(2.7)
P 		762.3
(2)
P 		745.5
(0.4)
P 		772.8
(3)
P 		764
(2.2)
P 		64
C 760.4
(-0.9)
P 		743.9
(-1.6)
P 		715
(-3)
P 		762.1
(-0.8)
P 		715.2
(-3)
P 		842.6
(3)
P 		128
avr 732.9
(0.3) 		736.2
(0.5) 		680.3
(-3) 		727.3
(-0) 		758.8
(2) 		775.3
(3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 343
1 2 3 4 range
A 392.2
(3)
P 		132.4
(-2.2)
P 		92.7
(-3)
P 		313.1
(1.4)
P 		300
B 347.4
(1.6)
P 		138.3
(-2)
P 		83.2
(-3)
P 		425.9
(3)
P 		343
C 332.5
(3)
P 		135.9
(-2.5)
P 		117.6
(-3)
P 		285.1
(1.7)
P 		215
avr 357.4
(3) 		135.5
(-2.1) 		97.8
(-3) 		341.4
(2.6) 		260

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 134.4
(-2.4)
P 		247.3
(3)
P 		122.7
(-3)
P 		171
(-0.7)
P 		237.9
(2.5)
P 		175.1
(-0.5)
P 		125
B 246.7
(-0.1)
P 		256.1
(0.3)
P 		185.1
(-3)
P 		197.5
(-2.4)
P 		314
(3)
P 		284.9
(1.6)
P 		129
C 281.9
(3)
P 		227
(0.4)
P 		182
(-1.7)
P 		153.3
(-3)
P 		231.4
(0.6)
P 		282.1
(3)
P 		129
avr 221
(0.5) 		243.5
(1.9) 		163.3
(-3) 		173.9
(-2.3) 		261.1
(3) 		247.4
(2.2) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184623_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5443
Sequence Type Exemplar sequence
Representative Public ID K01A2.10 NCBI
Target Description K01A2.10 /REP_DB=WormBase Gene ID /WP=CE19519 /TR=Q9TZ50 /GB=AAC69509.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061308(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061308 NCBI Caenorhabditis elegans K01A2.10 (K01A2.10) mRNA, complete cds. 11/11 None
SNAP00000016838 ENSEMBL cdna:SNAP chromosome:CEL140:II:321547:323094:-1 11/11 None
GENEFINDER00000016848 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:321547:323094:-1 11/11 None
K01A2.10 ENSEMBL cdna:known chromosome:CEL140:II:321460:323097:-1 gene:K01A2.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:321546-323094(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01A2.10
Entrez Gene 173422 Entrez gene
SwissProt Q9TZ50 EMBL-EBI
WormBase CE19519 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69509 Hypothetical protein K01A2.10 [Caenorhabditis elegans] ref|NP_493709.1| K01A2.10 [Caenorhabditis elegans] 1.0E-117
blast CAE62867 Hypothetical protein CBG07050 [Caenorhabditis briggsae] 5.0E-89
Sequence
Target Sequence 
>C. ELEGANS:184623_AT
gaagaacttgaaatccgcatcgacaaagccttgaaagaacgcgatgcagaatggaggaaa
catgaaaaatcacaaatccaatttttacaaaatgaaacttcaaatatgctgaaatcactt
cataatgaaattaatcgcctcggaaatgagttacgggaagaaaaacgaaaaactttgcac
ggggatgatgattcagcggataaaattgctgaactggaaaaagtaattacggaaaaggaa
gcttataccaagaatttagaaaaaaaagtttcaacgactattcaaaaacttcaggaacaa
attactattcagagtgaccgaatccgccagctaaacgaagaactctctgaccgtaaccaa
accgtaacccatctttcccaacaactccgtgccatcaaactccgcgaagcaatggcaaca
tcccagcatcgtcgtagagcctcatctcaactctccaccacgtcatcaccaccgatgacg
tcaccatcctcacctcatcggatctttccaccagtgtcaagtggactattatcagcttct
gttgctgtaacgtatcctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAACTTGAAATCCGCATCGACA 452 339 160 Antisense
AAATCCGCATCGACAAAGCCTTGAA 29 119 170 Antisense
GCACGGGGATGATGATTCAGCGGAT 481 315 336 Antisense
TATTCAGAGTGACCGAATCCGCCAG 578 661 465 Antisense
GAATCCGCCAGCTAAACGAAGAACT 98 329 479 Antisense
ACGAAGAACTCTCTGACCGTAACCA 41 87 494 Antisense
GCCATCAAACTCCGCGAAGCAATGG 641 279 550 Antisense
GAAGCAATGGCAACATCCCAGCATC 567 339 565 Antisense
CGGATCTTTCCACCAGTGTCAAGTG 399 243 658 Antisense
AGTGGACTATTATCAGCTTCTGTTG 27 59 679 Antisense
GCTTCTGTTGCTGTAACGTATCCTG 610 305 694 Antisense
Sequence Source Affymetrix Proprietary Database