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[184622_at]

Description F26A1.10 /REP_DB=WormBase Gene ID /WP=CE02678 /TR=Q19799 /GB=AAA68251.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 26      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 5.3
(-3)
A 		26.7
(1.3)
A 		6.3
(-2.8)
A 		35.3
(3)
A 		30
B 1.3
(-3)
A 		5.7
(-1.5)
A 		2.1
(-2.7)
A 		19.2
(3)
A 		18
C 3
(-3)
A 		16.9
(2.7)
A 		10.2
(-0.1)
A 		17.7
(3)
A 		15
avr 3.2
(-3) 		16.4
(0.8) 		6.2
(-2.1) 		24.1
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 1.9
(-3)
A 		2.7
(-3)
A 		9.2
(-2.6)
A 		22.5
(-1.9)
A 		43.8
(-0.8)
P 		115.9
(3)
P 		114
B 13.7
(-2.5)
A 		13.9
(-2.5)
A 		23.6
(-2.1)
A 		1.8
(-3)
A 		102.1
(1.1)
P 		149.2
(3)
P 		147
C 22.6
(-2.6)
A 		13.7
(-2.9)
A 		20.2
(-2.7)
A 		9.5
(-3)
A 		86.2
(-0.6)
P 		202.2
(3)
P 		193
avr 12.7
(-2.9) 		10.1
(-3) 		17.7
(-2.7) 		11.3
(-3) 		77.4
(-0.2) 		155.8
(3) 		146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.9
(-2.6)
A 		5.8
(3)
A 		1.6
(-3)
A 		5.2
(2.1)
A 		4
B 0.4
(-3)
A 		1.4
(-1.4)
A 		0.5
(-2.8)
A 		4.1
(3)
A 		4
C 1
(-3)
A 		4.8
(3)
A 		3.6
(1.1)
A 		3
(0.2)
A 		4
avr 1.1
(-3) 		4
(2.8) 		1.9
(-1.4) 		4.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1
(-2.9)
A 		2
(-2.7)
A 		5.7
(-1.9)
A 		13.2
(-0.2)
P 		28.2
(3)
P 		28
B 4.8
(-2.5)
A 		4.6
(-2.6)
A 		5.7
(-2.4)
A 		0.5
(-3)
A 		41.5
(1.5)
P 		55.6
(3)
P 		55
C 8.4
(-2.4)
A 		4.2
(-2.8)
A 		5.1
(-2.7)
A 		1.9
(-3)
A 		27.9
(-0.6)
P 		67.7
(3)
P 		66
avr 4.5
(-2.8) 		3.3
(-2.9) 		4.3
(-2.8) 		2.7
(-3) 		27.5
(0.1) 		50.5
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184622_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7747
Sequence Type Exemplar sequence
Representative Public ID F26A1.10 NCBI
Target Description F26A1.10 /REP_DB=WormBase Gene ID /WP=CE02678 /TR=Q19799 /GB=AAA68251.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065599(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065599 NCBI Caenorhabditis elegans F26A1.10 (F26A1.10) mRNA, complete cds. 11/11 None
SNAP00000001875 ENSEMBL cdna:SNAP chromosome:CEL140:III:4830053:4831045:-1 11/11 None
GENEFINDER00000001887 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4830053:4830268:-1 11/11 None
F26A1.10 ENSEMBL cdna:known chromosome:CEL140:III:4830053:4830268:-1 gene:F26A1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4830052-4830268(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26A1.10
Entrez Gene 175640 Entrez gene
SwissProt Q19799 EMBL-EBI
WormBase CE02678 Wormbase
Functional Annotations
Protein Domains
Database ID Description E-Value
Pfam IPR008498 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF780 5.0E-51
Pfam IPR008498 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF780 5.0E-51
Sequence
Target Sequence 
>C. ELEGANS:184622_AT
atggctgacaaatcggcatacatgtccgctggaggatacggatctggatacatgggagca
aatgcttcatcatctggatatgctcgggaggactacgctcagggtggcgctggaggatcc
ggaaatcagaatcagggaggatccggtggaaataccaatccagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTGACAAATCGGCATACATGT 593 53 13 Antisense
CAAATCGGCATACATGTCCGCTGGA 537 191 21 Antisense
GCATACATGTCCGCTGGAGGATACG 99 309 28 Antisense
GGAGGATACGGATCTGGATACATGG 60 517 43 Antisense
CTGGATACATGGGAGCAAATGCTTC 339 241 56 Antisense
GGAGCAAATGCTTCATCATCTGGAT 469 519 67 Antisense
TCATCTGGATATGCTCGGGAGGACT 545 609 82 Antisense
ATATGCTCGGGAGGACTACGCTCAG 534 21 90 Antisense
GGATCCGGAAATCAGAATCAGGGAG 623 511 127 Antisense
GAATCAGGGAGGATCCGGTGGAAAT 75 165 141 Antisense
GATCCGGTGGAAATACCAATCCAGG 169 417 152 Antisense
Sequence Source Affymetrix Proprietary Database