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[184621_at] 7TM chemoreceptor, srx family

Description F07G11.8 /REP_DB=WormBase Gene ID /WP=CE09228 /TR=O16236 /GB=AAG24053.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 20      6grp_cgc > 38      6grp_cgc_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 17.6
(-0.5)
A 		6.1
(-3)
A 		17.7
(-0.5)
A 		34.1
(3)
A 		28
B 27.9
(0.7)
A 		42
(3)
A 		5.8
(-3)
A 		22.1
(-0.3)
A 		36
C 31.4
(-2.2)
A 		26.7
(-2.9)
A 		25.7
(-3)
A 		67.1
(3)
A 		41
avr 25.6
(-0.8) 		24.9
(-0.9) 		16.4
(-3) 		41.1
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 43.1
(3)
A 		3.7
(-3)
A 		22.2
(-0.2)
A 		24.9
(0.2)
A 		3.7
(-3)
A 		33.3
(1.5)
A 		39
B 30.1
(2.1)
A 		17.1
(-3)
A 		30.7
(2.4)
A 		32.3
(3)
A 		19.5
(-2.1)
A 		21.5
(-1.3)
A 		15
C 7.4
(-2.7)
A 		8.5
(-2.5)
A 		7.5
(-2.7)
A 		5.1
(-3)
A 		25.7
(-0.1)
A 		47.7
(3)
A 		43
avr 26.9
(1.2) 		9.8
(-3) 		20.1
(-0.5) 		20.8
(-0.3) 		16.3
(-1.4) 		34.2
(3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.4
(3)
A 		1.3
(-3)
A 		4.6
(0.9)
A 		5
(1.4)
A 		5
B 8.9
(2)
A 		10.4
(3)
A 		1.3
(-3)
A 		4.7
(-0.8)
A 		9
C 10.4
(1.5)
A 		7.7
(-3)
A 		8.9
(-1)
A 		11.3
(3)
A 		4
avr 8.6
(3) 		6.5
(-0.4) 		4.9
(-3) 		7
(0.4) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8
(2.9)
A 		1.3
(-2.8)
A 		4.8
(0.2)
A 		6.3
(1.5)
A 		1.1
(-3)
A 		8.1
(3)
A 		7
B 10.5
(3)
A 		5.7
(-3)
A 		7.5
(-0.8)
A 		8.6
(0.6)
A 		7.9
(-0.3)
A 		8
(-0.1)
A 		5
C 2.8
(-2.3)
A 		2.6
(-2.4)
A 		1.9
(-2.6)
A 		1
(-3)
A 		8.3
(-0.1)
A 		16
(3)
A 		15
avr 7.1
(0.1) 		3.2
(-3) 		4.7
(-1.8) 		5.3
(-1.3) 		5.8
(-0.9) 		10.7
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184621_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11622
Sequence Type Exemplar sequence
Representative Public ID F07G11.8 NCBI
Target Description F07G11.8 /REP_DB=WormBase Gene ID /WP=CE09228 /TR=O16236 /GB=AAG24053.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072460(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072460 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-6) (srx-6) mRNA, complete cds. 11/11 None
GENEFINDER00000010041 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7314439:7315926:-1 11/11 None
F07G11.8 ENSEMBL cdna:known chromosome:CEL140:V:7314319:7315926:-1 gene:F07G11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7314319-7315927(-) 99.43 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-6
Ensembl F07G11.8
Entrez Gene 184161 Entrez gene
SwissProt O16236 EMBL-EBI
WormBase CE09228 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504861 Serpentine Receptor, class X family member (srx-6) [Caenorhabditis elegans] gb|AAG24053.1| Serpentine receptor, class x protein 6 [Caenorhabditis elegans] 1.0E-156
blast NP_503299 Serpentine Receptor, class X family member (srx-5) [Caenorhabditis elegans] gb|AAK72315.1| Serpentine receptor, class x protein 5 [Caenorhabditis elegans] 1.0E-121
blast NP_504861 Serpentine Receptor, class X family member (srx-6) [Caenorhabditis elegans] gb|AAG24053.1| Serpentine receptor, class x protein 6 [Caenorhabditis elegans] 1.0E-113
blast NP_503299 Serpentine Receptor, class X family member (srx-5) [Caenorhabditis elegans] gb|AAK72315.1| Serpentine receptor, class x protein 5 [Caenorhabditis elegans] 1.0E-103
blast CAE65415 Hypothetical protein CBG10369 [Caenorhabditis briggsae] 1.0E-80
blast CAE65415 Hypothetical protein CBG10369 [Caenorhabditis briggsae] 2.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504861.1 7 5-27,40-62,77-99,111-133,162-184,205-227,237-259
F07G11.8 7 5-27,40-62,77-99,111-133,162-184,205-227,237-259
GENEFINDER00000010041 5 7-29,39-61,164-186,206-228,249-271
Sequence
Target Sequence 
>C. ELEGANS:184621_AT
gaacaatctttatcttcatcattcttataactttgacttcattttctgctgcatgtattc
aatactttttaccgtgttgtgttttaattgttgacatcgatatcatgtcctacatgtttt
tgagcattgagggagttcattcatactctaacgacattttgttagtctacgatgtctttt
gcacatccatatccacattttgctatgtgtccgtattcatttatatccgcaatgcaaata
gaaacgttgaggacagtgttcagagtaacaaaagaaaacaagaagcacggtacctttttc
aatttgttttcatttccattttctatgtggctgtatggatattgttccaaattctcccgt
atattgttccggcagaccaaccgatttggttctcgtcggttccatttttggtcacactga
actgctcttcgaattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAATCTTTATCTTCATCATTCT 290 353 338 Antisense
ACTTTGACTTCATTTTCTGCTGCAT 248 103 367 Antisense
TGTTAGTCTACGATGTCTTTTGCAC 125 561 497 Antisense
TCTTTTGCACATCCATATCCACATT 395 615 512 Antisense
GTGTCCGTATTCATTTATATCCGCA 398 487 544 Antisense
GAAGCACGGTACCTTTTTCAATTTG 6 339 619 Antisense
CCAAATTCTCCCGTATATTGTTCCG 578 275 684 Antisense
TATTGTTCCGGCAGACCAACCGATT 45 655 699 Antisense
GACCAACCGATTTGGTTCTCGTCGG 239 375 712 Antisense
GTCGGTTCCATTTTTGGTCACACTG 602 471 732 Antisense
CACACTGAACTGCTCTTCGAATTCT 35 195 750 Antisense
Sequence Source Affymetrix Proprietary Database