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[184620_at]

Description F10E7.10 /REP_DB=WormBase Gene ID /WP=CE04365 /TR=Q19304 /GB=AAA82426.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      4grp_high_8_8 > 46      6grp_total > 82      4grp_total > 49      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 58.9
(-3)
P 		177
(3)
P 		164.3
(2.4)
P 		85.6
(-1.6)
P 		118
B 44.1
(-2.7)
A 		185.5
(2.5)
P 		197.7
(3)
P 		36.5
(-3)
A 		161
C 51.1
(-3)
P 		180.2
(3)
P 		167.7
(2.4)
P 		120.7
(0.2)
P 		129
avr 51.4
(-3) 		180.9
(3) 		176.6
(2.8) 		80.9
(-1.6) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 124.4
(3)
P 		104.3
(1.3)
P 		53.1
(-3)
P 		67.4
(-1.8)
P 		107.3
(1.6)
P 		75.2
(-1.1)
P 		71
B 38.2
(-3)
A 		102
(3)
P 		83.9
(1.3)
M 		94.1
(2.3)
P 		82.7
(1.2)
P 		61.9
(-0.8)
P 		64
C 52
(-3)
P 		75
(-0.8)
P 		83
(-0.1)
P 		115.7
(3)
P 		88.9
(0.5)
P 		68.4
(-1.5)
P 		64
avr 71.5
(-2.3) 		93.8
(3) 		73.3
(-1.9) 		92.4
(2.7) 		93
(2.8) 		68.5
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 21.4
(-1.2)
P 		38.4
(2.1)
P 		43
(3)
P 		12.5
(-3)
P 		31
B 14.1
(-2)
A 		45.8
(3)
P 		45.8
(3)
P 		7.8
(-3)
A 		38
C 16.9
(-3)
P 		51.8
(2)
P 		58.4
(3)
P 		20.4
(-2.5)
P 		42
avr 17.5
(-2.3) 		45.3
(2.4) 		49.1
(3) 		13.6
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 22.9
(-0.3)
P 		37.1
(3)
P 		11.6
(-3)
P 		17.1
(-1.7)
P 		32.4
(1.9)
P 		18.3
(-1.4)
P 		26
B 13.3
(-3)
A 		33.9
(3)
P 		20.4
(-0.9)
M 		24.9
(0.4)
P 		33.6
(2.9)
P 		23.1
(-0.1)
P 		21
C 19.3
(-3)
P 		22.9
(-0.7)
P 		21.1
(-1.9)
P 		23.3
(-0.5)
P 		28.8
(3)
P 		22.9
(-0.7)
P 		10
avr 18.5
(-2.7) 		31.3
(2.9) 		17.7
(-3) 		21.8
(-1.2) 		31.6
(3) 		21.4
(-1.4) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184620_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4998
Sequence Type Exemplar sequence
Representative Public ID F10E7.10 NCBI
Target Description F10E7.10 /REP_DB=WormBase Gene ID /WP=CE04365 /TR=Q19304 /GB=AAA82426.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063071(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063071 NCBI Caenorhabditis elegans F10E7.10 (F10E7.10) mRNA, complete cds. 11/11 None
SNAP00000000730 ENSEMBL cdna:SNAP chromosome:CEL140:II:7113724:7115804:-1 11/11 None
GENEFINDER00000000739 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7113724:7115804:-1 11/11 None
F10E7.10 ENSEMBL cdna:known chromosome:CEL140:II:7113724:7115804:-1 gene:F10E7.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7113719-7115800(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10E7.10
Entrez Gene 184302 Entrez gene
SwissProt Q19304 EMBL-EBI
WormBase CE04365 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82426 Hypothetical protein F10E7.10 [Caenorhabditis elegans] ref|NP_495472.1| F10E7.10 [Caenorhabditis elegans] 0.0
blast CAE67545 Hypothetical protein CBG13070 [Caenorhabditis briggsae] 0.0
blast CAA91480 Hypothetical protein T04F8.4 [Caenorhabditis elegans] ref|NP_509946.1| T04F8.4 [Caenorhabditis elegans] 2.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 3.0E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495472.1 1 399-421
F10E7.10 1 399-421
SNAP00000000730 1 399-421
GENEFINDER00000000739 1 399-421
Sequence
Target Sequence 
>C. ELEGANS:184620_AT
gattatcgccacctgaagcatgtccgtctttagaagaacgattcaacgaagatccagaca
aaggaaaagtatttgcagatgagatccatcctccagcttcaatgccttctgatttgactg
gccctaatggagatacttcagttgaatttgttcgtagagcaccagccaagggaagcattt
actatggcgttggttataatccaaaacgacatcgacgtgagattctgatcaacactgctc
cacgttcaccaaaacaatttgtaatgaaaaatggatatccagaaatggaaatggtcggag
aattaagagttttcgagaatccacaagatgttgagtattacgaatcccaacgatcctccg
cttcagctacatcgtctgtctgcgaatcacaatcttctacattgttcttctgtcttcttg
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTATCGCCACCTGAAGCATGTCC 111 431 803 Antisense
TGCAGATGAGATCCATCCTCCAGCT 313 577 876 Antisense
CTCCAGCTTCAATGCCTTCTGATTT 41 237 893 Antisense
ATGCCTTCTGATTTGACTGGCCCTA 448 41 904 Antisense
GACTGGCCCTAATGGAGATACTTCA 562 375 918 Antisense
GAATTTGTTCGTAGAGCACCAGCCA 466 325 946 Antisense
TGCTCCACGTTCACCAAAACAATTT 369 577 1038 Antisense
AGTATTACGAATCCCAACGATCCTC 652 61 1136 Antisense
TTCAGCTACATCGTCTGTCTGCGAA 48 689 1164 Antisense
GTCTGCGAATCACAATCTTCTACAT 385 471 1180 Antisense
TACATTGTTCTTCTGTCTTCTTGTT 416 645 1200 Antisense
Sequence Source Affymetrix Proprietary Database