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[184619_at]

Description F35D11.8 /REP_DB=WormBase Gene ID /WP=CE02721 /TR=Q20037 /GB=AAA68754.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 26      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 36.5
(-3)
A 		52.6
(3)
P 		50.5
(2.2)
A 		49.3
(1.8)
A 		16
B 27.4
(-3)
A 		52.8
(3)
P 		34.5
(-1.3)
A 		42.4
(0.5)
P 		25
C 32
(0.6)
A 		27.6
(-0.4)
A 		15.7
(-3)
A 		43
(3)
P 		27
avr 32
(-3) 		44.3
(2.7) 		33.6
(-2.3) 		44.9
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 25.8
(-0.2)
A 		48.9
(3)
A 		36.2
(1.2)
A 		5.7
(-3)
A 		6.6
(-2.9)
A 		15.1
(-1.7)
A 		43
B 30.6
(3)
M 		21.6
(1)
A 		24.8
(1.7)
A 		3.1
(-3)
A 		18.3
(0.3)
A 		9.8
(-1.5)
A 		28
C 17.6
(-2)
A 		20.6
(-0.9)
A 		27.3
(1.6)
A 		15
(-3)
A 		30.9
(3)
A 		26.3
(1.3)
A 		16
avr 24.7
(1.5) 		30.4
(3) 		29.4
(2.7) 		7.9
(-3) 		18.6
(-0.1) 		17.1
(-0.5) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 13.3
(3)
A 		11.4
(1.1)
P 		13.2
(2.9)
A 		7.2
(-3)
A 		6
B 8.7
(-2.2)
A 		13
(3)
P 		8
(-3)
A 		9
(-1.8)
P 		5
C 10.6
(3)
A 		7.9
(-0.2)
A 		5.5
(-3)
A 		7.2
(-1)
P 		5
avr 10.9
(3) 		10.8
(2.8) 		8.9
(-0.9) 		7.8
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.8
(-1.7)
A 		17.4
(3)
A 		7.9
(-0.6)
A 		1.4
(-3)
A 		2
(-2.8)
A 		3.7
(-2.1)
A 		16
B 10.7
(3)
M 		7.2
(0.9)
A 		6
(0.2)
A 		0.8
(-3)
A 		7.4
(1)
A 		3.7
(-1.2)
A 		10
C 6.5
(0)
A 		6.3
(-0.2)
A 		7
(0.4)
A 		3
(-3)
A 		10
(3)
A 		8.8
(2)
A 		7
avr 7.3
(0.9) 		10.3
(3) 		7
(0.7) 		1.7
(-3) 		6.5
(0.3) 		5.4
(-0.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184619_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5430
Sequence Type Exemplar sequence
Representative Public ID F35D11.8 NCBI
Target Description F35D11.8 /REP_DB=WormBase Gene ID /WP=CE02721 /TR=Q20037 /GB=AAA68754.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062413(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062413 NCBI Caenorhabditis elegans F35D11.8 (F35D11.8) mRNA, complete cds. 11/11 None
SNAP00000013542 ENSEMBL cdna:SNAP chromosome:CEL140:II:4617206:4618044:-1 11/11 None
GENEFINDER00000013556 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4617206:4619787:-1 11/11 None
F35D11.8 ENSEMBL cdna:known chromosome:CEL140:II:4617206:4618077:-1 gene:F35D11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4617204-4618076(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35D11.8
Entrez Gene 185281 Entrez gene
SwissProt Q20037 EMBL-EBI
WormBase CE02721 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68754 Hypothetical protein F35D11.8 [Caenorhabditis elegans] ref|NP_494814.1| F35D11.8 [Caenorhabditis elegans] 1.0E-136
blast AAA68754 Hypothetical protein F35D11.8 [Caenorhabditis elegans] ref|NP_494814.1| F35D11.8 [Caenorhabditis elegans] 1.0E-130
blast AAA68754 Hypothetical protein F35D11.8 [Caenorhabditis elegans] ref|NP_494814.1| F35D11.8 [Caenorhabditis elegans] 1.0E-129
blast AAA68755 Hypothetical protein F35D11.9 [Caenorhabditis elegans] ref|NP_494815.1| F35D11.9 [Caenorhabditis elegans] 1.0E-104
blast AAA68755 Hypothetical protein F35D11.9 [Caenorhabditis elegans] ref|NP_494815.1| F35D11.9 [Caenorhabditis elegans] 2.0E-72
blast AAA68755 Hypothetical protein F35D11.9 [Caenorhabditis elegans] ref|NP_494815.1| F35D11.9 [Caenorhabditis elegans] 3.0E-72
blast AAA68753 Hypothetical protein F35D11.7 [Caenorhabditis elegans] ref|NP_494813.2| F35D11.7 [Caenorhabditis elegans] 3.0E-47
Sequence
Target Sequence 
>C. ELEGANS:184619_AT
ggatctgggaaatcgcgaccgagcccgttcagtatgtatctattacaatgcgtcgttgag
tattccagaaaattcacacgaactcgaagtgatttctaagactgctagcttgagaaacat
ttccgtaccaatcgctcttgatggacaactctctccaagatgcaaattcgcaatttacaa
aggacaagtaaagggtgcaaaacgatttaatcaaacttctgaagaaggaatttgcaatat
taaatatgaattgttcatatatgatgatattaatacggatacttcattcattcgcacaaa
gctaggtgtttcggcaggatcaaacgtaagaagtgtacaagctgatgatgatatcgagta
tcgcagtacagcagattgtaccgttttggaaaaaggatcgtatcactattctaatggaac
actaaaagatgggcacactaatttgatggattgtatgggacagctagctggctccaagag
gctaccagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCTGGGAAATCGCGACCGAGCC 89 511 195 Antisense
CGAGCCCGTTCAGTATGTATCTATT 708 249 214 Antisense
ACAATGCGTCGTTGAGTATTCCAGA 317 115 239 Antisense
GTGATTTCTAAGACTGCTAGCTTGA 112 485 283 Antisense
GAGAAACATTTCCGTACCAATCGCT 334 391 306 Antisense
AATCGCTCTTGATGGACAACTCTCT 27 169 324 Antisense
ATACTTCATTCATTCGCACAAAGCT 412 23 473 Antisense
AAGCTAGGTGTTTCGGCAGGATCAA 625 149 493 Antisense
AAGGATCGTATCACTATTCTAATGG 237 159 587 Antisense
GTATGGGACAGCTAGCTGGCTCCAA 443 455 647 Antisense
AGCTGGCTCCAAGAGGCTACCAGAA 192 77 660 Antisense
Sequence Source Affymetrix Proprietary Database