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[184618_at]

Description C50H11.6 /REP_DB=WormBase Gene ID /WP=CE08922 /TR=O16475 /GB=AAG23994.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 33      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 6.5
(-2.9)
A 		5.7
(-3)
A 		7.1
(-2.8)
A 		43.5
(3)
A 		38
B 33.9
(1.6)
A 		42
(3)
A 		41.7
(2.9)
A 		7.8
(-3)
A 		34
C 11.5
(-3)
A 		19.8
(3)
A 		15.8
(0.1)
A 		15.5
(-0.1)
A 		8
avr 17.3
(-3) 		22.5
(3) 		21.5
(1.8) 		22.3
(2.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 33
(3)
A 		20.6
(0.6)
A 		1.8
(-3)
A 		7.1
(-2)
A 		19
(0.3)
A 		16.3
(-0.2)
A 		31
B 31.6
(3)
A 		10.3
(-1.3)
A 		29.8
(2.6)
A 		15.6
(-0.2)
A 		1.6
(-3)
A 		3.7
(-2.6)
A 		30
C 19.6
(2.7)
A 		11.5
(-0.8)
A 		8.4
(-2.1)
A 		6.3
(-3)
A 		20.3
(3)
A 		8.1
(-2.2)
A 		14
avr 28.1
(3) 		14.1
(-1.5) 		13.3
(-1.7) 		9.7
(-2.9) 		13.6
(-1.7) 		9.4
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.4
(-1.6)
A 		1.2
(-3)
A 		1.9
(-2.2)
A 		6.4
(3)
A 		5
B 10.8
(3)
A 		10.4
(2.7)
A 		9.7
(2.3)
A 		1.7
(-3)
A 		9
C 3.8
(-0.7)
A 		5.7
(3)
A 		5.5
(2.6)
A 		2.6
(-3)
A 		3
avr 5.7
(2.7) 		5.8
(3) 		5.7
(2.7) 		3.6
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 6.1
(2)
A 		7.3
(3)
A 		0.4
(-3)
A 		1.8
(-1.8)
A 		5.7
(1.6)
A 		4
(0.1)
A 		7
B 11
(3)
A 		3.4
(-1.4)
A 		7.2
(0.8)
A 		4.1
(-1)
A 		0.6
(-3)
A 		1.4
(-2.5)
A 		10
C 7.3
(3)
A 		3.5
(-0.8)
A 		2.1
(-2.2)
A 		1.3
(-3)
A 		6.6
(2.3)
A 		2.7
(-1.6)
A 		6
avr 8.1
(3) 		4.7
(-0.6) 		3.2
(-2.2) 		2.4
(-3) 		4.3
(-1) 		2.7
(-2.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184618_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15411
Sequence Type Exemplar sequence
Representative Public ID C50H11.6 NCBI
Target Description C50H11.6 /REP_DB=WormBase Gene ID /WP=CE08922 /TR=O16475 /GB=AAG23994.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C50H11.6 ENSEMBL cdna:pseudogene chromosome:CEL140:V:3075234:3077000:1 gene:C50H11.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043564 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3075233-3077000(+) 100.0 100.0
Public Domain and Genome References
Ensembl C50H11.6
Sequence
Target Sequence 
>C. ELEGANS:184618_AT
gaagagcgtttttccttttgttctggtagcactcatcttattcagtttgtggtgtttttt
gtttgttaaaccggttttgttctccgttatacttagttcttggatctataacccattgat
cggaacaaatcccgaactttacgacagtaatcctgataccatttgcaacattgttctagt
tgttaccacatctcttttgtacatctatctgtcttacaatttaattttcaaatttggctt
ttccacttcgatttggctttataaaacaaaacgccagattatattccaagcaataattct
ttgtgtattccacgccattgtggccggactttatgagtttatgcggtttttctattactc
gccaacattaatcatcatcagtcaagttttatggggatggagcagtggatgcatgtgcat
tgcctatctaacattcaatagaacaattcggaatttggttaaaaaaattataatacctaa
atccatcagaatgcgatatggaattcacggtgatttcgaagagcacttggcacacactga
agctgcacacaacgttggcactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGCGTTTTTCCTTTTGTTCTG 231 339 345 Antisense
GTTCTGGTAGCACTCATCTTATTCA 166 443 364 Antisense
TTGTTCTCCGTTATACTTAGTTCTT 65 705 421 Antisense
GTTGTTACCACATCTCTTTTGTACA 691 437 523 Antisense
GCTTTTCCACTTCGATTTGGCTTTA 404 303 581 Antisense
AATTCTTTGTGTATTCCACGCCATT 470 175 639 Antisense
CGCCATTGTGGCCGGACTTTATGAG 213 257 657 Antisense
ATGCGGTTTTTCTATTACTCGCCAA 554 41 685 Antisense
TACTCGCCAACATTAATCATCATCA 210 647 700 Antisense
CACTTGGCACACACTGAAGCTGCAC 335 197 868 Antisense
GAAGCTGCACACAACGTTGGCACTG 295 343 883 Antisense
Sequence Source Affymetrix Proprietary Database