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[184617_at]

Description F20D6.10 /REP_DB=WormBase Gene ID /WP=CE07114 /TR=Q19654 /GB=AAB37053.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 70      4grp_highest_8_8 > 63      4grp_high_8_8 > 27      6grp_highest_nonorm > 70      6grp_total > 03      4grp_total > 29      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 307.3
(2.2)
P 		266.7
(0.6)
P 		173.9
(-3)
P 		326.7
(3)
P 		153
B 312.6
(3)
P 		280.1
(1.2)
P 		206.5
(-3)
P 		272.2
(0.7)
P 		106
C 297.5
(3)
P 		286.4
(2.2)
P 		211.7
(-3)
P 		297.2
(3)
P 		86
avr 305.8
(3) 		277.7
(1.4) 		197.4
(-3) 		298.7
(2.6) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 290.8
(0.6)
P 		335.9
(2.4)
P 		285.3
(0.4)
P 		350.3
(3)
P 		269.9
(-0.2)
P 		199.5
(-3)
P 		151
B 328.9
(3)
P 		327.7
(3)
P 		262.4
(0.3)
P 		282.3
(1.1)
P 		270
(0.6)
P 		179
(-3)
P 		150
C 329.5
(0.8)
P 		292.5
(-0.1)
P 		293.6
(-0.1)
P 		421.3
(3)
P 		269.7
(-0.6)
P 		171.2
(-3)
P 		250
avr 316.4
(1.8) 		318.7
(1.8) 		280.4
(0.5) 		351.3
(3) 		269.9
(0.1) 		183.2
(-3) 		168
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 111.9
(3)
P 		57.9
(-1.9)
P 		45.5
(-3)
P 		47.8
(-2.8)
P 		66
B 99.7
(3)
P 		69.2
(-0.5)
P 		47.8
(-3)
P 		58
(-1.8)
P 		52
C 98.5
(3)
P 		82.3
(1)
P 		73.8
(-0.1)
P 		50.1
(-3)
P 		48
avr 103.4
(3) 		69.8
(-0.9) 		55.7
(-2.6) 		52
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 53.6
(-2.6)
P 		119.5
(3)
P 		62.1
(-1.9)
P 		88.9
(0.4)
P 		81.4
(-0.2)
P 		48.6
(-3)
P 		71
B 114.4
(3)
P 		109.1
(2.4)
P 		63.7
(-3)
P 		74.8
(-1.7)
P 		109.7
(2.4)
P 		66.8
(-2.6)
P 		51
C 122.1
(3)
P 		89.3
(-0)
P 		74.7
(-1.4)
P 		84.7
(-0.5)
P 		87.3
(-0.2)
P 		57.3
(-3)
P 		65
avr 96.7
(1.8) 		106
(3) 		66.8
(-1.9) 		82.8
(0.1) 		92.8
(1.4) 		57.6
(-3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184617_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11639
Sequence Type Exemplar sequence
Representative Public ID F20D6.10 NCBI
Target Description F20D6.10 /REP_DB=WormBase Gene ID /WP=CE07114 /TR=Q19654 /GB=AAB37053.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072710(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072710 NCBI Caenorhabditis elegans F20D6.10 (F20D6.10) mRNA, complete cds. 11/11 None
F20D6.10 ENSEMBL cdna:known chromosome:CEL140:V:8194752:8198393:-1 gene:F20D6.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033164 7/11 Cross Hyb Matching Probes None
GENEFINDER00000033174 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8194750-8198394(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20D6.10
Entrez Gene 184728 Entrez gene
SwissProt Q19654 EMBL-EBI
WormBase CE35282 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37053 Hypothetical protein F20D6.10 [Caenorhabditis elegans] ref|NP_505111.2| F20D6.10 [Caenorhabditis elegans] 0.0
blast CAE66108 Hypothetical protein CBG11328 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505111.2 4 41-63,95-117,130-152,172-194
F20D6.10 4 41-63,95-117,130-152,172-194
Sequence
Target Sequence 
>C. ELEGANS:184617_AT
ggatactgtcgaactggcaagaattgaatcccttgaaacaccaccattaagcccgattcc
agaagatgaaattaaagaaccatctccatcaaaaacgaatcaaaaattgaatcgaagtaa
ttcaagatcagaagaacgacgaggttcgactaattccacagtatcccatcgtgtaaatag
aggattatctgaaaccccgaaaaaagagaaacaaccaagatctgtaaaaaagacagcatc
tgaagggacgagtagaattgaagatgatttaagaagaatgtcatctacaaaagaacatca
tcacaaagaacatattcatcatgcagaatctaaagattcaccaaatatgccaaaaagata
tgctaaattaaaatcaagtgagagttcaagaaaaagacattcccatcgtcaaaaaagttt
cgataacagcttcatcggctccattttgctgatcgtttacatcaactattttttcaattc
ataccctgatctcaatttctgtacatttctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATACTGTCGAACTGGCAAGAATT 691 507 840 Antisense
ATTGAATCCCTTGAAACACCACCAT 222 3 862 Antisense
CACCATTAAGCCCGATTCCAGAAGA 391 199 881 Antisense
GAACCATCTCCATCAAAAACGAATC 523 345 916 Antisense
CGACGAGGTTCGACTAATTCCACAG 603 251 976 Antisense
AATTCCACAGTATCCCATCGTGTAA 414 177 991 Antisense
TAGAGGATTATCTGAAACCCCGAAA 16 653 1017 Antisense
TCGATAACAGCTTCATCGGCTCCAT 98 603 1259 Antisense
GCTCCATTTTGCTGATCGTTTACAT 168 299 1277 Antisense
TTTTCAATTCATACCCTGATCTCAA 146 677 1310 Antisense
GATCTCAATTTCTGTACATTTCTCG 384 419 1327 Antisense
Sequence Source Affymetrix Proprietary Database