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[184614_s_at]

Description T26C11.4 /REP_DB=WormBase Gene ID /WP=CE05023 /TR=Q22809 /GB=AAC48213.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 26      4grp_high_8_8 > 42      6grp_total > 25      4grp_total > 46      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 244.4
(1.1)
P 		242.1
(0.9)
P 		192.8
(-3)
P 		268.6
(3)
M 		76
B 268.5
(3)
P 		202.7
(-0.3)
P 		188.5
(-1)
P 		147.4
(-3)
P 		121
C 278.4
(3)
P 		240.5
(-0.1)
P 		226.3
(-1.3)
P 		204.9
(-3)
P 		74
avr 263.8
(3) 		228.4
(-0.5) 		202.5
(-3) 		207
(-2.6) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 275.4
(3)
P 		257.4
(1.9)
P 		191.2
(-2)
P 		174.7
(-3)
P 		179.7
(-2.7)
P 		222.4
(-0.2)
P 		101
B 283.2
(3)
P 		239.7
(1.2)
P 		191.1
(-0.8)
P 		137.8
(-3)
P 		185.7
(-1)
P 		162.2
(-2)
P 		145
C 219.7
(1.5)
P 		222.1
(1.7)
P 		241.2
(3)
P 		180.2
(-1.2)
A 		171.1
(-1.8)
P 		153.8
(-3)
P 		87
avr 259.4
(3) 		239.7
(1.8) 		207.8
(-0.3) 		164.2
(-3) 		178.8
(-2.1) 		179.5
(-2) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 89
(3)
P 		52.5
(-1.4)
P 		50.4
(-1.7)
P 		39.3
(-3)
M 		50
B 85.6
(3)
P 		50.1
(-0.9)
P 		43.7
(-1.6)
P 		31.4
(-3)
P 		54
C 92.2
(3)
P 		69.1
(0.6)
P 		78.9
(1.6)
P 		34.5
(-3)
P 		58
avr 88.9
(3) 		57.2
(-0.5) 		57.7
(-0.5) 		35.1
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 50.8
(-1.9)
P 		91.5
(3)
P 		41.6
(-3)
P 		44.3
(-2.7)
P 		54.2
(-1.5)
P 		54.1
(-1.5)
P 		50
B 98.5
(3)
P 		79.8
(1.2)
P 		46.4
(-2)
P 		36.5
(-3)
P 		75.4
(0.8)
P 		60.5
(-0.7)
P 		62
C 81.4
(3)
P 		67.8
(1.2)
P 		61.4
(0.3)
P 		36.2
(-3)
A 		55.4
(-0.5)
P 		51.5
(-1)
P 		45
avr 76.9
(2.6) 		79.7
(3) 		49.8
(-1.4) 		39
(-3) 		61.7
(0.3) 		55.4
(-0.6) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184614_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18064
Sequence Type Exemplar sequence
Representative Public ID T26C11.4 NCBI
Target Description T26C11.4 /REP_DB=WormBase Gene ID /WP=CE05023 /TR=Q22809 /GB=AAC48213.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075938(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075938 NCBI Caenorhabditis elegans T26C11.4 (T26C11.4) mRNA, complete cds. 11/11 None
GENEFINDER00000040403 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1840581:1845501:-1 11/11 None
SNAP00000040393 ENSEMBL cdna:SNAP chromosome:CEL140:X:1840769:1845501:-1 10/11 None
T26C11.4 ENSEMBL cdna:known chromosome:CEL140:X:1840561:1845531:-1 gene:T26C11.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1840874-1845501(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26C11.4
Entrez Gene 180502 Entrez gene
SwissProt Q22809 EMBL-EBI
WormBase CE05023 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508339 T26C11.4 [Caenorhabditis elegans] gb|AAC48213.1| Hypothetical protein T26C11.4 [Caenorhabditis elegans] 0.0
blast CAC15861 Hypothetical protein T27D12.4 [Caenorhabditis elegans] emb|CAC15867.1| Hypothetical protein T27D12.4 [Caenorhabditis elegans] ref|NP_496527.1| Patterned Expression Site family member (pes-5) [Caenorhabditis elegans] 2.0E-15
blast CAB60580 Hypothetical protein Y6D1A.1 [Caenorhabditis elegans] ref|NP_496526.1| Y6D1A.1 [Caenorhabditis elegans] 3.0E-9
Sequence
Target Sequence 
>C. ELEGANS:184614_S_AT
taccaagatcagcgtggaccccaaacggaaaaattccaatccaaatttcttaactgcagc
aatcacaatgatgaacactcaaacatcgatgaaagtgagagttcatatcaaaaaaataga
gaccgaagcggttacagtaatgatggtccacatttcaatagagctgtcccaagatgccca
ccacacgatgtctcaatgtcccatggttacaagcagggatatcaatcagacgagacattt
gacaatgatgcagaatcaaccagtgaattctctttcttgtacgagcgcaaaaatcaacac
ggcttccgaggtgaaggatctggttttcaacgtgactgtaagcttctaacttttacctta
aaaattttgggattaaaccacccgcagacatcgcctgaggtccagatcgccgacagacaa
caagccgattcggtggatttgcaagccgcagttccaaagcagaacggtgattcgtccgtg
ccaatactgcaaaaagctgcaccgagcagacgagtgccacgttgtgccagacgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCAAGATCAGCGTGGACCCCAAA 621 649 1048 Antisense
CAATAGAGCTGTCCCAAGATGCCCA 207 181 1203 Antisense
GATGTCTCAATGTCCCATGGTTACA 469 409 1234 Antisense
GAATTCTCTTTCTTGTACGAGCGCA 86 325 1312 Antisense
GCGCAAAAATCAACACGGCTTCCGA 659 287 1332 Antisense
CAGATCGCCGACAGACAACAAGCCG 187 207 1450 Antisense
AAGCCGATTCGGTGGATTTGCAAGC 103 147 1469 Antisense
GATTTGCAAGCCGCAGTTCCAAAGC 37 427 1483 Antisense
GCAGAACGGTGATTCGTCCGTGCCA 188 309 1506 Antisense
GCTGCACCGAGCAGACGAGTGCCAC 19 297 1543 Antisense
CGAGTGCCACGTTGTGCCAGACGTG 576 249 1558 Antisense
Sequence Source Affymetrix Proprietary Database