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[184613_at]

Description F07G11.3 /REP_DB=WormBase Gene ID /WP=CE09224 /TR=O16232 /GB=AAG24048.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 02      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 3.5
(3)
A 		2.3
(-3)
A 		2.4
(-2.5)
A 		3.1
(1)
A 		1
B 2.1
(-2.9)
A 		2.4
(-2.5)
A 		2
(-3)
A 		7
(3)
A 		5
C 1.8
(-3)
A 		3
(-2.9)
A 		5.2
(-2.7)
A 		78.7
(3)
P 		77
avr 2.5
(-3) 		2.6
(-3) 		3.2
(-2.8) 		29.6
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 3.1
(-3)
A 		4.3
(-3)
A 		34
(-2.2)
A 		243.3
(3)
P 		206.3
(2.1)
P 		6
(-2.9)
A 		240
B 4
(-3)
A 		5.9
(-3)
A 		6.2
(-2.9)
A 		246.3
(3)
P 		224
(2.4)
P 		42.2
(-2.1)
A 		242
C 1.6
(-3)
A 		2.9
(-3)
A 		36.6
(-1.8)
A 		160.4
(2.6)
P 		173.2
(3)
P 		18.7
(-2.4)
A 		172
avr 2.9
(-3) 		4.4
(-3) 		25.6
(-2.4) 		216.7
(3) 		201.2
(2.6) 		22.3
(-2.5) 		214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.3
(3)
A 		0.5
(-3)
A 		0.6
(-2.3)
A 		0.5
(-3)
A 		1
B 0.7
(-1.8)
A 		0.6
(-2.4)
A 		0.5
(-3)
A 		1.5
(3)
A 		1
C 0.6
(-3)
A 		0.9
(-2.9)
A 		1.8
(-2.4)
A 		13.3
(3)
P 		13
avr 0.9
(-2.7) 		0.7
(-3) 		1
(-2.6) 		5.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.5
(-2.9)
A 		7.4
(-2.3)
A 		61.7
(2.9)
P 		62.3
(3)
P 		1.5
(-2.9)
A 		62
B 1.4
(-3)
A 		2
(-3)
A 		1.5
(-3)
A 		65.2
(1.3)
P 		91
(3)
P 		15.7
(-2)
A 		90
C 0.6
(-3)
A 		0.9
(-3)
A 		9.3
(-2.1)
A 		32.3
(0.4)
P 		56
(3)
P 		6.3
(-2.4)
A 		55
avr 0.9
(-3) 		1.5
(-2.9) 		6.1
(-2.5) 		53.1
(1.5) 		69.8
(3) 		7.8
(-2.4) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184613_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12402
Sequence Type Exemplar sequence
Representative Public ID F07G11.3 NCBI
Target Description F07G11.3 /REP_DB=WormBase Gene ID /WP=CE09224 /TR=O16232 /GB=AAG24048.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072456(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072456 NCBI Caenorhabditis elegans F07G11.3 (F07G11.3) mRNA, complete cds. 11/11 None
SNAP00000010037 ENSEMBL cdna:SNAP chromosome:CEL140:V:7301667:7304065:1 10/11 None
F07G11.3 ENSEMBL cdna:known chromosome:CEL140:V:7301364:7304065:1 gene:F07G11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010045 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7301364-7304066(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07G11.3
Entrez Gene 184158 Entrez gene
SwissProt O16232 EMBL-EBI
WormBase CE09224 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504857 F07G11.3 [Caenorhabditis elegans] gb|AAG24048.1| Hypothetical protein F07G11.3 [Caenorhabditis elegans] 0.0
blast NP_504855 F07G11.4 [Caenorhabditis elegans] gb|AAG24051.1| Hypothetical protein F07G11.4 [Caenorhabditis elegans] 0.0
blast AAA82261 Hypothetical protein C33H5.2 [Caenorhabditis elegans] ref|NP_501294.1| C33H5.2 [Caenorhabditis elegans] sp|Q18416|YY42_CAEEL Hypothetical protein C33H5.2 in chromosome IV 1.0E-168
blast AAA82261 Hypothetical protein C33H5.2 [Caenorhabditis elegans] ref|NP_501294.1| C33H5.2 [Caenorhabditis elegans] sp|Q18416|YY42_CAEEL Hypothetical protein C33H5.2 in chromosome IV 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504857.1 1 19-36
F07G11.3 1 19-36
Sequence
Target Sequence 
>C. ELEGANS:184613_AT
gcaaacatttcgtaaggcgtttccaaaatttgaaaattctaaaaaatttaataattcaga
gggaaaccggtaaaagtgtggttgatccattgcgtgtcaatttcacatctctgcattttc
caccacaaactcccaaaacagagaaatacattgtgtctgagaatgtgatcactcatctta
aaacaatcgactgggtagacgatattaaggatccaaacagggaagaagtcattgagcctc
acttttatgataattcatcaaccacaattatatccaaaaaggacataattgatctcgaag
atgatcttcaaaaaatgatgaagaaactgcaggacacaagagtattttcgaagttgcctc
gaattcgctattattcggatttggtgcttaaatgctacaacgaaaaatactacgatttgt
tttacaataacagaaaaacggagattacatgccctgggcctcacttttgcgatttcaaac
aacatttgactatcaaatgcatgcgaataaatgctacatacactgccatggagacattgt
cacctgttacttattatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAACATTTCGTAAGGCGTTTCCA 210 319 995 Antisense
GGAAGAAGTCATTGAGCCTCACTTT 584 529 1215 Antisense
GAGCCTCACTTTTATGATAATTCAT 567 385 1228 Antisense
TTCATCAACCACAATTATATCCAAA 209 689 1248 Antisense
GAAGTTGCCTCGAATTCGCTATTAT 268 337 1344 Antisense
CGCTATTATTCGGATTTGGTGCTTA 478 255 1360 Antisense
AAAACGGAGATTACATGCCCTGGGC 414 131 1429 Antisense
GGCCTCACTTTTGCGATTTCAAACA 666 541 1451 Antisense
TAAATGCTACATACACTGCCATGGA 369 641 1502 Antisense
ACACTGCCATGGAGACATTGTCACC 601 109 1514 Antisense
CATTGTCACCTGTTACTTATTATTA 542 217 1529 Antisense
Sequence Source Affymetrix Proprietary Database