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[184612_s_at]

Description R08C7.10 /REP_DB=WormBase Gene ID /WP=CE07433 /TR=Q21843 /GB=AAC48078.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 68      6grp_total > 57      4grp_total > 46      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 414
(3)
P 		299.2
(-0.6)
A 		222.5
(-3)
A 		234.4
(-2.6)
A 		192
B 411
(3)
P 		255.9
(-2.1)
A 		251.8
(-2.2)
M 		229
(-3)
A 		182
C 442.4
(3)
P 		261.3
(-2.7)
A 		253.6
(-3)
A 		252.4
(-3)
A 		190
avr 422.5
(3) 		272.1
(-1.9) 		242.6
(-2.9) 		238.6
(-3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 342.3
(-1.4)
M 		323.4
(-1.9)
P 		278.3
(-2.9)
A 		273
(-3)
P 		304.1
(-2.3)
P 		540.4
(3)
P 		267
B 212.2
(-3)
P 		326.8
(-0.7)
P 		225.6
(-2.7)
P 		259.8
(-2)
P 		241.8
(-2.4)
P 		512.3
(3)
P 		300
C 411.1
(2.2)
P 		341.3
(0.1)
P 		244
(-3)
A 		343.8
(0.1)
A 		262.7
(-2.4)
P 		435
(3)
P 		191
avr 321.9
(-1.2) 		330.5
(-1) 		249.3
(-3) 		292.2
(-2) 		269.5
(-2.5) 		495.9
(3) 		247
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 150.7
(3)
P 		65
(-1.4)
A 		58.2
(-1.8)
A 		34.3
(-3)
A 		116
B 131.1
(3)
P 		63.2
(-2)
A 		58.3
(-2.3)
M 		48.8
(-3)
A 		82
C 146.4
(3)
P 		75.1
(-1.1)
A 		88.4
(-0.4)
A 		42.6
(-3)
A 		104
avr 142.7
(3) 		67.8
(-1.5) 		68.3
(-1.4) 		41.9
(-3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 63.1
(-2.8)
M 		115
(1.6)
P 		60.6
(-3)
A 		69.2
(-2.3)
P 		91.8
(-0.4)
P 		131.6
(3)
P 		71
B 73.8
(-2.2)
P 		108.8
(-0.6)
P 		54.8
(-3)
P 		68.8
(-2.4)
P 		98.3
(-1.1)
P 		191
(3)
P 		136
C 152.4
(3)
P 		104.1
(-0.2)
P 		62.1
(-3)
A 		69.1
(-2.5)
A 		85
(-1.5)
P 		145.6
(2.5)
P 		90
avr 96.4
(-0.7) 		109.3
(0.1) 		59.2
(-3) 		69
(-2.4) 		91.7
(-1) 		156.1
(3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184612_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11081
Sequence Type Exemplar sequence
Representative Public ID R08C7.10 NCBI
Target Description R08C7.10 /REP_DB=WormBase Gene ID /WP=CE07433 /TR=Q21843 /GB=AAC48078.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068166(11), NM_068165(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068166 NCBI Caenorhabditis elegans R08C7.10a (R08C7.10) mRNA, complete cds. 11/11 None
NM_068165 NCBI Caenorhabditis elegans R08C7.10b (R08C7.10) mRNA, complete cds. 11/11 None
SNAP00000031360 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4442619:4445733:-1 11/11 None
GENEFINDER00000031372 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4442619:4445733:-1 11/11 None
R08C7.10a ENSEMBL cdna:known chromosome:CEL140:IV:4442397:4445733:-1 gene:R08C7.10 11/11 None
R08C7.10b ENSEMBL cdna:known chromosome:CEL140:IV:4442619:4445814:-1 gene:R08C7.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068167 5/11 Cross Hyb Matching Probes None
R08C7.10c 5/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177211 3 2 NM_068165 184612_s_at (11)
NM_068166 184612_s_at (11)
NM_068167 174980_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4442624-4445739(-) 100.0 100.0
Public Domain and Genome References
Ensembl R08C7.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48078 Hypothetical protein R08C7.10a [Caenorhabditis elegans] ref|NP_500567.1| R08C7.10a [Caenorhabditis elegans] 0.0
blast AAK82910 Hypothetical protein R08C7.10b [Caenorhabditis elegans] ref|NP_500566.1| R08C7.10b [Caenorhabditis elegans] 0.0
blast AAK82911 Hypothetical protein R08C7.10c [Caenorhabditis elegans] ref|NP_500568.1| R08C7.10c [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:184612_S_AT
tgatgacttcacttctgaccaatcttgtggaacgatgcaatgcgaaccgaaaagttctga
tagcccagacagttaagatggtgattcccgggcacgacgttgaagaagttccagcattgg
aggcgatcacacggctatttgtctaccatgaatctcaggctcaaattgtcgatgccgatc
tggatcgggaattggcgtttgatgaaggaggatgcggagacgaggaagaagaagaagagg
gtggagacgaaagcagtgacgaggatggtgtcaggaaagacggacggcttgatcggaata
aaatggacagaatggatcaagtggatgtagttcatgctcttcaacaagtcatgaacaaag
cctcggctcatatggaaggcagtgtaatcgcttcttaccacgctcttctcgtcggattcg
ttctccaacagaacgaggatcatctcgacgaggttcggaagcacctgcctggcaaaaact
tccaaaatatgatatcgcaattgaagcggttgtacgatttcacgaaagctacgatggcga
agcgggtcgaatcaaattcgggattccgggctatcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATGACTTCACTTCTGACCAATCT 242 567 1643 Antisense
TGATTCCCGGGCACGACGTTGAAGA 673 561 1724 Antisense
CCAGCATTGGAGGCGATCACACGGC 77 271 1753 Antisense
TCACACGGCTATTTGTCTACCATGA 156 629 1769 Antisense
GTCTACCATGAATCTCAGGCTCAAA 584 469 1783 Antisense
GTGGATGTAGTTCATGCTCTTCAAC 640 489 1963 Antisense
CAAGTCATGAACAAAGCCTCGGCTC 225 183 1987 Antisense
AAGGCAGTGTAATCGCTTCTTACCA 189 161 2018 Antisense
TCGACGAGGTTCGGAAGCACCTGCC 381 599 2087 Antisense
AGCACCTGCCTGGCAAAAACTTCCA 263 77 2102 Antisense
AAATTCGGGATTCCGGGCTATCGAG 30 115 2196 Antisense
Sequence Source Affymetrix Proprietary Database