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[184611_at]

Description Y47G6A.4 /REP_DB=WormBase Gene ID /WP=CE24371 /TR=Q9N3S2 /GB=AAF60656.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 88      4grp_highest_8_8 > 44      4grp_high_8_8 > 16      6grp_highest_nonorm > 83      6grp_total > 88      4grp_total > 31      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 328
1 2 3 4 range
A 641.5
(3)
P 		314
(-3)
P 		346.6
(-2.4)
P 		487
(0.2)
P 		328
B 505.9
(3)
P 		343.4
(-3)
P 		402.8
(-0.8)
P 		438.8
(0.5)
P 		163
C 583.3
(3)
P 		399
(-2.6)
P 		384.8
(-3)
P 		454.6
(-0.9)
P 		199
avr 576.9
(3) 		352.1
(-3) 		378.1
(-2.3) 		460.1
(-0.1) 		225

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 421.2
(-1.4)
P 		495.1
(1)
P 		370.4
(-3)
P 		436.2
(-0.9)
P 		455.3
(-0.3)
P 		558.3
(3)
P 		188
B 426.4
(-0.6)
P 		397.9
(-1.6)
P 		360.6
(-3)
P 		389.5
(-1.9)
P 		424.5
(-0.6)
P 		523.6
(3)
P 		163
C 372.5
(-3)
P 		439.3
(-0.6)
P 		517.9
(2.2)
P 		409
(-1.7)
P 		538.2
(2.9)
P 		540.6
(3)
P 		168
avr 406.7
(-3) 		444.1
(-1.3) 		416.3
(-2.6) 		411.6
(-2.8) 		472.7
(-0) 		540.8
(3) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 233.6
(3)
P 		68.2
(-3)
P 		90.6
(-2.2)
P 		71.3
(-2.9)
P 		165
B 161.3
(3)
P 		84.8
(-3)
P 		93.3
(-2.3)
P 		93.5
(-2.3)
P 		77
C 193.1
(3)
P 		114.7
(-1)
P 		134.1
(-0)
P 		76.7
(-3)
P 		116
avr 196
(3) 		89.2
(-2.5) 		106
(-1.7) 		80.5
(-3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 77.6
(-3)
P 		176.1
(3)
P 		80.7
(-2.8)
P 		110.6
(-1)
P 		137.4
(0.6)
P 		135.9
(0.6)
P 		99
B 148.4
(0.4)
P 		132.5
(-0.5)
P 		87.6
(-3)
P 		103.2
(-2.1)
P 		172.5
(1.7)
P 		195.3
(3)
P 		108
C 138.1
(0.4)
P 		134
(0.1)
P 		131.8
(0)
P 		82.3
(-3)
P 		174.2
(2.6)
P 		181
(3)
P 		99
avr 121.4
(-1.1) 		147.5
(1.1) 		100
(-2.9) 		98.7
(-3) 		161.4
(2.2) 		170.7
(3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184611_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.156
Sequence Type Exemplar sequence
Representative Public ID Y47G6A.4 NCBI
Target Description Y47G6A.4 /REP_DB=WormBase Gene ID /WP=CE24371 /TR=Q9N3S2 /GB=AAF60656.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058777(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058777 NCBI Caenorhabditis elegans Y47G6A.4 (Y47G6A.4) mRNA, complete cds. 11/11 None
SNAP00000033986 ENSEMBL cdna:SNAP chromosome:CEL140:I:3533996:3551851:1 11/11 None
GENEFINDER00000034094 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3547130:3551851:1 11/11 None
Y47G6A.4 ENSEMBL cdna:known chromosome:CEL140:I:3547096:3551990:1 gene:Y47G6A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3547129-3551851(+) 99.63 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47G6A.4
Entrez Gene 171923 Entrez gene
SwissProt Q9N3S2 EMBL-EBI
WormBase CE24371 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491178 Y47G6A.4 [Caenorhabditis elegans] gb|AAF60656.1| Hypothetical protein Y47G6A.4 [Caenorhabditis elegans] 0.0
blast NP_491175 Y47G6A.5a [Caenorhabditis elegans] gb|AAF60657.1| Hypothetical protein Y47G6A.5a [Caenorhabditis elegans] 0.0
blast NP_871806 Y47G6A.5b [Caenorhabditis elegans] gb|AAO12400.1| Hypothetical protein Y47G6A.5b [Caenorhabditis elegans] 0.0
blast CAE68955 Hypothetical protein CBG14935 [Caenorhabditis briggsae] 1.0E-77
blast CAE68955 Hypothetical protein CBG14935 [Caenorhabditis briggsae] 2.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR000980 EMBL-EBI SH2 motif 1.4E-12
Pfam IPR001452 EMBL-EBI SH3 3.9E-9
Pfam IPR000719 EMBL-EBI Protein kinase 7.2E-59
Sequence
Target Sequence 
>C. ELEGANS:184611_AT
gggaaccggcttcaaggattcgtgatttcgccgccagttcatgagatttgcattcaagac
gggagtgacacaagtttgcctcaaacaatcttggcaagaacaatatcccgtaatgacgcc
gaagtctacgccgccaggcagagagataccgatgaacaatatgacgtccatcaagaaggt
ccatctaatcatgatcaatacgaattcgcatctgaaccactggatttcgaagaagattct
gatgaggaaaactacaatgaacagcttgatgttccttattcttacaacgatcacttcatc
agctcatcatctgttcgtgagccagagcatcccagtgcaagatcaagagatgttgctcca
aatgttcaacaagaatctgttgtggttccggctccaaggcgattgtcgccacagcgagct
ccacgcccgtcacaaaatagtccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAACCGGCTTCAAGGATTCGTGA 399 493 1273 Antisense
TCGCCGCCAGTTCATGAGATTTGCA 705 599 1300 Antisense
GGAGTGACACAAGTTTGCCTCAAAC 65 517 1334 Antisense
AGTCTACGCCGCCAGGCAGAGAGAT 64 61 1395 Antisense
GAATTCGCATCTGAACCACTGGATT 591 323 1474 Antisense
ACAGCTTGATGTTCCTTATTCTTAC 294 109 1533 Antisense
CTTACAACGATCACTTCATCAGCTC 497 221 1553 Antisense
TCATCAGCTCATCATCTGTTCGTGA 110 621 1568 Antisense
GCCAGAGCATCCCAGTGCAAGATCA 699 277 1593 Antisense
TCCGGCTCCAAGGCGATTGTCGCCA 133 595 1659 Antisense
TCCACGCCCGTCACAAAATAGTCCG 278 589 1692 Antisense
Sequence Source Affymetrix Proprietary Database