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[184610_at]

Description Y49E10.23 /REP_DB=WormBase Gene ID /WP=CE22238 /TR=Q9XTT2 /GB=CAB11567.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 70      6grp_total > 31      4grp_total > 39      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 202.3
(3)
P 		108.4
(-2.4)
A 		97.1
(-3)
A 		124.4
(-1.4)
P 		105
B 295.7
(3)
P 		112.3
(-2.3)
A 		89.4
(-3)
P 		110.3
(-2.4)
A 		206
C 221
(3)
P 		96.2
(-3)
A 		132
(-1.3)
P 		155.8
(-0.1)
P 		125
avr 239.7
(3) 		105.6
(-3) 		106.2
(-3) 		130.2
(-1.9) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 115.3
(-0.8)
P 		222.6
(3)
P 		131.4
(-0.3)
P 		204.5
(2.4)
P 		54.7
(-3)
A 		60.6
(-2.8)
P 		168
B 107.7
(3)
P 		103.7
(2.4)
A 		90.4
(0.5)
A 		78.6
(-1.1)
A 		104.3
(2.5)
P 		65.5
(-3)
M 		42
C 135.9
(0.4)
P 		126.5
(-0.4)
P 		170.9
(3)
P 		91.5
(-3)
A 		106.6
(-1.9)
P 		99.4
(-2.4)
P 		79
avr 119.6
(0.5) 		150.9
(3) 		130.9
(1.4) 		124.9
(0.9) 		88.5
(-1.9) 		75.2
(-3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 73.7
(3)
P 		23.5
(-2.4)
A 		25.4
(-2.2)
A 		18.2
(-3)
P 		56
B 94.3
(3)
P 		27.7
(-2.4)
A 		20.7
(-3)
P 		23.5
(-2.8)
A 		74
C 73.1
(3)
P 		27.7
(-2.8)
A 		46
(-0.5)
P 		26.3
(-3)
P 		47
avr 80.4
(3) 		26.3
(-2.6) 		30.7
(-2.2) 		22.7
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 21.2
(-2.4)
P 		79.2
(3)
P 		28.6
(-1.7)
P 		51.9
(0.5)
P 		16.5
(-2.8)
A 		14.7
(-3)
P 		65
B 37.5
(1.6)
P 		34.5
(0.8)
A 		22
(-2.7)
A 		20.8
(-3)
A 		42.4
(3)
P 		24.4
(-2)
M 		22
C 50.4
(3)
P 		38.6
(0.8)
P 		43.5
(1.7)
P 		18.4
(-3)
A 		34.5
(0)
P 		33.3
(-0.2)
P 		32
avr 36.4
(-0.2) 		50.8
(3) 		31.4
(-1.4) 		30.4
(-1.6) 		31.1
(-1.4) 		24.1
(-3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184610_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6541
Sequence Type Exemplar sequence
Representative Public ID Y49E10.23 NCBI
Target Description Y49E10.23 /REP_DB=WormBase Gene ID /WP=CE22238 /TR=Q9XTT2 /GB=CAB11567.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067227(11), NM_181971(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067227 NCBI Caenorhabditis elegans Y49E10.23a (Y49E10.23) mRNA, complete cds. 11/11 A 
NM_181971 NCBI Caenorhabditis elegans Y49E10.23b (Y49E10.23) mRNA, complete cds. 11/11 A 
GENEFINDER00000016122 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12472815:12484409:1 11/11 None
SNAP00000016094 ENSEMBL cdna:SNAP chromosome:CEL140:III:12479626:12484409:1 11/11 None
Y49E10.23a ENSEMBL cdna:known chromosome:CEL140:III:12472754:12484513:1 gene:Y49E10.23 11/11 A 
Y49E10.23b ENSEMBL cdna:known chromosome:CEL140:III:12472815:12484513:1 gene:Y49E10.23 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12472810-12484405(+) 92.93 100.0
Public Domain and Genome References
Ensembl Y49E10.23
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB11567 Hypothetical protein Y49E10.23a [Caenorhabditis elegans] ref|NP_499628.1| Y49E10.23a [Caenorhabditis elegans] 0.0
blast CAD56612 Hypothetical protein Y49E10.23b [Caenorhabditis elegans] ref|NP_871700.1| Y49E10.23b [Caenorhabditis elegans] 0.0
blast CAE66479 Hypothetical protein CBG11758 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:184610_AT
tctcggagcacacgttttggcaccgccaacttcttcggatccttcaatgtcttcgaggtc
gagggctagttcaattactagtattgatcgggttacgagtacatcccgtgaggaagaggt
ctcttcagcagctggagaagaagccaaacgtattgaaaacgaggagcaaaagctgaatat
gcaacagattatgatcgataaaattgtaattttgcaacgaaaattggctcggaggactga
aaaatgcgaatttttggaagaacacgtcagacagtgcctcgaagaacttcagaaaaagac
caaaataattcaacattttgcacttcgagaagaagcttcacttcttatgccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCGGAGCACACGTTTTGGCACCG 651 607 1593 Antisense
CAACTTCTTCGGATCCTTCAATGTC 379 189 1619 Antisense
GATCCTTCAATGTCTTCGAGGTCGA 98 417 1630 Antisense
GAGGTCGAGGGCTAGTTCAATTACT 58 395 1647 Antisense
GGGTTACGAGTACATCCCGTGAGGA 491 431 1682 Antisense
GTACATCCCGTGAGGAAGAGGTCTC 116 461 1691 Antisense
AAGAGGTCTCTTCAGCAGCTGGAGA 45 155 1706 Antisense
GAAGAACACGTCAGACAGTGCCTCG 526 339 1849 Antisense
AGACAGTGCCTCGAAGAACTTCAGA 366 71 1861 Antisense
TCAACATTTTGCACTTCGAGAAGAA 122 631 1902 Antisense
GAAGAAGCTTCACTTCTTATGCCAT 146 341 1921 Antisense
Sequence Source Affymetrix Proprietary Database