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[184609_at]

Description Y47G6A.1 /REP_DB=WormBase Gene ID /WP=CE27258 /TR=Q9N3R4 /GB=AAF60654.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 08      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 28.4
(-3)
A 		78.5
(-1.3)
A 		94
(-0.7)
A 		201
(3)
P 		173
B 50.5
(-1.8)
A 		16
(-3)
A 		48.4
(-1.9)
A 		188.2
(3)
P 		172
C 68.4
(-3)
P 		70.2
(-2.9)
A 		127.1
(-0.7)
P 		220.5
(3)
P 		152
avr 49.1
(-3) 		54.9
(-2.8) 		89.8
(-1.4) 		203.2
(3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 471
1 2 3 4 5 6 range
A 94.9
(-2.8)
A 		83.5
(-3)
A 		100.6
(-2.7)
P 		181.8
(-1.1)
P 		277.4
(0.7)
P 		398.6
(3)
P 		315
B 46.8
(-3)
A 		47.2
(-3)
A 		143
(-1.6)
P 		140.5
(-1.6)
P 		258.3
(0.1)
P 		451.5
(3)
P 		405
C 41.6
(-3)
A 		92.9
(-2.3)
P 		92.4
(-2.4)
P 		200
(-1)
P 		271.9
(-0.1)
P 		512.6
(3)
P 		471
avr 61.1
(-3) 		74.5
(-2.8) 		112
(-2.2) 		174.1
(-1.3) 		269.2
(0.2) 		454.2
(3) 		393
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 10.3
(-3)
A 		17
(-0.9)
A 		24.6
(1.5)
A 		29.4
(3)
P 		19
B 16.1
(-1)
A 		3.9
(-3)
A 		11.2
(-1.8)
A 		40.1
(3)
P 		36
C 22.6
(-2.4)
P 		20.2
(-3)
A 		44.3
(3)
P 		37.2
(1.2)
P 		24
avr 16.3
(-2.3) 		13.7
(-3) 		26.7
(0.6) 		35.6
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 17.5
(-3)
A 		29.7
(-2.1)
A 		21.9
(-2.7)
P 		46.1
(-0.8)
P 		83.7
(2)
P 		97.1
(3)
P 		80
B 16.3
(-3)
A 		15.7
(-3)
A 		34.7
(-2.3)
P 		37.2
(-2.2)
P 		104.9
(0.5)
P 		168.4
(3)
P 		153
C 15.4
(-3)
A 		28.3
(-2.5)
P 		23.5
(-2.7)
P 		40.2
(-2)
P 		88
(-0.2)
P 		171.6
(3)
P 		156
avr 16.4
(-3) 		24.6
(-2.6) 		26.7
(-2.5) 		41.2
(-1.8) 		92.2
(0.5) 		145.7
(3) 		129
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184609_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.175
Sequence Type Exemplar sequence
Representative Public ID Y47G6A.1 NCBI
Target Description Y47G6A.1 /REP_DB=WormBase Gene ID /WP=CE27258 /TR=Q9N3R4 /GB=AAF60654.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058786(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058786 NCBI Caenorhabditis elegans INneXin family member (inx-21) (inx-21) mRNA, complete cds. 11/11 A 
SNAP00000033999 ENSEMBL cdna:SNAP chromosome:CEL140:I:3611944:3618109:1 11/11 None
GENEFINDER00000034093 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3611944:3618109:1 11/11 None
Y47G6A.1 ENSEMBL cdna:known chromosome:CEL140:I:3611881:3618308:1 gene:Y47G6A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3611880-3618109(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol inx-21
Ensembl Y47G6A.1
Entrez Gene 171930 Entrez gene
SwissProt Q9N3R4 EMBL-EBI
WormBase CE38570 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491187 INneXin family member (inx-21) [Caenorhabditis elegans] gb|AAF60654.3| Innexin protein 21 [Caenorhabditis elegans] 0.0
blast CAE66629 Hypothetical protein CBG11965 [Caenorhabditis briggsae] 1.0E-124
blast CAE66628 Hypothetical protein CBG11964 [Caenorhabditis briggsae] 9.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491187.2 4 26-43,106-128,190-212,292-314
Y47G6A.1 4 47-64,127-149,211-233,313-335
SNAP00000033999 4 26-43,106-128,190-212,292-314
GENEFINDER00000034093 4 26-43,106-128,190-212,292-314
Sequence
Target Sequence 
>C. ELEGANS:184609_AT
gctcgatgtatgctctcagcgaactttctgaacgctaaggcatttctcgtactttattgg
tggtttctgcttgtctcgttcatttcactgtgttctgcaattcattatacaattattcta
ctcgttccacagtatcgacgacacgagttcaaatcgatgattcgaactgaagatcatttc
atcgaacgatacggtgaaccacatccaaacctacatctcggtaaagaagctccattagaa
tatctcgttgaacatctcggaaacgatggattcttggtagttgaaatggtatatgatatg
cttcatcattacgaatgtgatcgttttactgaacatatatggatgcatataattgttcat
aatggagaagaagattttgaagatgatgagattgagaacaagaaaatcaaaattgttgat
gaaatggaaatggacggagccggagatcgtaatagtggtggaatagacaaaaaagagacc
aacgactggtcatcgtctgctggtacatccaagaataaggattccacttctaaagtttct
ttaagcgcatcgcagccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCGATGTATGCTCTCAGCGAACT 509 295 964 Antisense
AACGCTAAGGCATTTCTCGTACTTT 653 145 994 Antisense
TTTATTGGTGGTTTCTGCTTGTCTC 656 673 1016 Antisense
TCTCGTTCATTTCACTGTGTTCTGC 374 611 1037 Antisense
TACAATTATTCTACTCGTTCCACAG 709 641 1071 Antisense
CGTTCCACAGTATCGACGACACGAG 537 247 1086 Antisense
GAACGATACGGTGAACCACATCCAA 311 345 1147 Antisense
CCACATCCAAACCTACATCTCGGTA 499 275 1162 Antisense
ACCAACGACTGGTCATCGTCTGCTG 311 85 1441 Antisense
CATCGTCTGCTGGTACATCCAAGAA 155 211 1454 Antisense
GTTTCTTTAAGCGCATCGCAGCCAT 459 449 1498 Antisense
Sequence Source Affymetrix Proprietary Database