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[184607_at]

Description Y66H1B.1 /REP_DB=WormBase Gene ID /WP=CE20345 /TR=Q9TYW6 /GB=AAC68998.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 19      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 25
(-3)
A 		29.7
(-2.5)
A 		25.4
(-3)
A 		78
(3)
A 		53
B 30.9
(3)
A 		11.3
(-1.2)
A 		2.7
(-3)
A 		11.7
(-1.1)
A 		28
C 17.5
(-3)
A 		55.3
(1.6)
A 		21.9
(-2.5)
A 		66.6
(3)
A 		49
avr 24.5
(-1.7) 		32.1
(-0.4) 		16.7
(-3) 		52.1
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 108.4
(3)
A 		6.2
(-2.9)
A 		4
(-3)
A 		4.9
(-2.9)
A 		18.6
(-2.2)
A 		6.1
(-2.9)
A 		104
B 4.4
(-2.7)
A 		6.8
(1)
A 		6.5
(0.5)
A 		8.1
(3)
A 		7.4
(1.9)
A 		4.2
(-3)
A 		4
C 28.1
(3)
A 		10.6
(-1.3)
A 		8.5
(-1.8)
A 		10.1
(-1.4)
A 		3.8
(-2.9)
A 		3.4
(-3)
A 		25
avr 47
(3) 		7.9
(-2.5) 		6.3
(-2.8) 		7.7
(-2.6) 		9.9
(-2.3) 		4.6
(-3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9.1
(0.2)
A 		6.4
(-3)
A 		6.6
(-2.8)
A 		11.4
(3)
A 		5
B 9.8
(3)
A 		2.8
(-1.6)
A 		0.6
(-3)
A 		2.5
(-1.8)
A 		9
C 5.8
(-3)
A 		15.9
(3)
A 		7.6
(-1.9)
A 		11.2
(0.2)
A 		10
avr 8.2
(2.7) 		8.4
(3) 		4.9
(-3) 		8.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 20
(3)
A 		2.2
(-2.6)
A 		0.9
(-3)
A 		1.2
(-2.9)
A 		5.6
(-1.5)
A 		1.5
(-2.8)
A 		19
B 1.5
(-3)
A 		2.3
(0.2)
A 		1.6
(-2.6)
A 		2.1
(-0.6)
A 		3
(3)
A 		1.6
(-2.6)
A 		2
C 10.4
(3)
A 		3.2
(-1.7)
A 		2.2
(-2.3)
A 		2
(-2.5)
A 		1.2
(-3)
A 		1.2
(-3)
A 		9
avr 10.6
(3) 		2.6
(-2.2) 		1.6
(-2.9) 		1.8
(-2.7) 		3.3
(-1.8) 		1.4
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184607_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10880
Sequence Type Exemplar sequence
Representative Public ID Y66H1B.1 NCBI
Target Description Y66H1B.1 /REP_DB=WormBase Gene ID /WP=CE20345 /TR=Q9TYW6 /GB=AAC68998.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067507(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067507 NCBI Caenorhabditis elegans F18F11.3 (F18F11.3) mRNA, complete cds. 11/11 None
SNAP00000025520 ENSEMBL cdna:SNAP chromosome:CEL140:IV:349214:358882:1 10/11 None
GENEFINDER00000025527 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:350431:358708:1 10/11 None
F18F11.3 ENSEMBL cdna:known chromosome:CEL140:IV:344343:358882:1 gene:F18F11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:350430-358882(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18F11.3
Entrez Gene 184652 Entrez gene
WormBase CE38065 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1637488_AT dm
DROSGENOME1:149910_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7156 homophilic cell adhesion inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_499908 F18F11.3 [Caenorhabditis elegans] 0.0
blast T33757 hypothetical protein Y66H1B.1 - Caenorhabditis elegans 0.0
blast CAE65552 Hypothetical protein CBG10540 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002126 EMBL-EBI Cadherin 8.2E-10
Pfam IPR002126 EMBL-EBI Cadherin 4.5E-11
Pfam IPR002126 EMBL-EBI Cadherin 1.3E-16
Pfam IPR002126 EMBL-EBI Cadherin 3.8E-11
Pfam IPR002126 EMBL-EBI Cadherin 6.7E-6
Pfam IPR002126 EMBL-EBI Cadherin 4.5E-11
Pfam IPR002126 EMBL-EBI Cadherin 2.9E-12
Pfam IPR002126 EMBL-EBI Cadherin 3.8E-11
Pfam IPR002126 EMBL-EBI Cadherin 6.7E-6
Pfam IPR002126 EMBL-EBI Cadherin 4.5E-11
Pfam IPR002126 EMBL-EBI Cadherin 1.3E-16
Pfam IPR002126 EMBL-EBI Cadherin 3.8E-11
Pfam IPR002126 EMBL-EBI Cadherin 9.7E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499908.2 2 42-64,1584-1606
F18F11.3 2 42-64,1584-1606
SNAP00000025520 1 1326-1348
GENEFINDER00000025527 1 1222-1244
Sequence
Target Sequence 
>C. ELEGANS:184607_AT
gatactgcttctgttgtgatctcagtggtaacatatgcacagcaaacggagcttgtcttt
gatgctccgtttgaattaattatgaaaaatgagaagaaaattgcagaaaacctatcaaat
gcgactggtctccaaacaatagttgacaaatgccgacaaaatgccaattttactctgatg
cttgtacattttatggatattaatggacaatttgtaaatgtggatcgagctgtgaaccta
ttgatgtcatcatcggctgaatctcgaagagaactcagaagtgtatacgggcttagagaa
gctttccctcccgttccgataccatctaaagttccacaatatattttgatcgccgtgctt
ttattctttgtaatatcaatactctcaatgtgtatatggtgtcgacaacggaataactac
gaacgaaagctccgtcacatctcagcacaagcatctactgtacatacagtaacacttgga
agaggcggaaaacagacgtgtaatccgggttacggtgaaattccaataattagccgacat
catcatcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACTGCTTCTGTTGTGATCTCAG 2 425 3346 Antisense
GAGCTTGTCTTTGATGCTCCGTTTG 149 387 3394 Antisense
ACCTATCAAATGCGACTGGTCTCCA 274 87 3455 Antisense
AAATGCCAATTTTACTCTGATGCTT 247 119 3504 Antisense
GTGGATCGAGCTGTGAACCTATTGA 534 487 3565 Antisense
TGATGTCATCATCGGCTGAATCTCG 331 567 3587 Antisense
TCCCGTTCCGATACCATCTAAAGTT 639 597 3654 Antisense
TGATCGCCGTGCTTTTATTCTTTGT 144 565 3692 Antisense
TACGAACGAAAGCTCCGTCACATCT 329 557 3763 Antisense
GTCACATCTCAGCACAAGCATCTAC 399 465 3779 Antisense
AATAATTAGCCGACATCATCATCCT 570 171 3870 Antisense
Sequence Source Affymetrix Proprietary Database