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[184606_at]

Description Y105C5B.8 /REP_DB=WormBase Gene ID /WP=CE24084 /TR=Q9NAM8 /GB=CAB54354.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 9.4
(-2.5)
A 		44.5
(3)
A 		6.3
(-3)
A 		25
(-0.1)
A 		38
B 39.1
(3)
A 		17.1
(-0.6)
A 		2.8
(-3)
A 		6.6
(-2.4)
A 		36
C 15.8
(-2.6)
A 		9.5
(-3)
A 		10.5
(-2.9)
A 		97.1
(3)
A 		88
avr 21.4
(-0.5) 		23.7
(-0.2) 		6.5
(-3) 		42.9
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 26.9
(-1.3)
A 		10.6
(-3)
A 		10.7
(-3)
A 		53.6
(1.5)
A 		68.2
(3)
A 		30
(-1)
A 		58
B 36
(-0.2)
A 		10.9
(-3)
A 		17.6
(-2.2)
A 		64.3
(3)
A 		19.4
(-2)
A 		29.1
(-1)
A 		53
C 25.9
(-1.2)
A 		52.7
(1.9)
A 		10.5
(-3)
A 		61.8
(3)
A 		44
(0.9)
A 		19
(-2)
A 		51
avr 29.6
(-0.9) 		24.7
(-1.5) 		12.9
(-3) 		59.9
(3) 		43.9
(1) 		26
(-1.3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.4
(-1.7)
A 		9.7
(3)
A 		1.7
(-3)
A 		3.7
(-1.5)
A 		8
B 12.5
(3)
A 		4.2
(-1.2)
A 		0.7
(-3)
A 		1.4
(-2.6)
A 		12
C 5.2
(-1.9)
A 		2.7
(-3)
A 		3.7
(-2.6)
A 		16.4
(3)
A 		14
avr 7
(2.8) 		5.5
(1) 		2
(-3) 		7.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 5
(-2.1)
A 		3.8
(-2.5)
A 		2.3
(-3)
A 		13.6
(0.7)
A 		20.6
(3)
A 		7.3
(-1.4)
A 		18
B 12.5
(1)
A 		3.6
(-3)
A 		4.3
(-2.7)
A 		17
(3)
A 		7.9
(-1.1)
A 		10.9
(0.3)
A 		13
C 9.6
(0.1)
A 		16.1
(3)
A 		2.7
(-3)
A 		12.4
(1.3)
A 		14.2
(2.1)
A 		6.4
(-1.3)
A 		13
avr 9
(0.2) 		7.8
(-0.5) 		3.1
(-3) 		14.3
(3) 		14.2
(2.9) 		8.2
(-0.3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184606_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8823
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.8 NCBI
Target Description Y105C5B.8 /REP_DB=WormBase Gene ID /WP=CE24084 /TR=Q9NAM8 /GB=CAB54354.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070496
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000018425 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15922689:15926801:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070496 8/11 Cross Hyb Matching Probes None
SNAP00000018391 8/11 Cross Hyb Matching Probes None
Y105C5B.8 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15922694-15926807(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54354 Hypothetical protein Y105C5B.8 [Caenorhabditis elegans] ref|NP_502897.2| Y105C5B.8 [Caenorhabditis elegans] 1.0E-120
blast CAE57380 Hypothetical protein CBG00326 [Caenorhabditis briggsae] 3.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000018425 7 21-43,63-85,106-128,143-165,194-216,284-306,313-332
Sequence
Target Sequence 
>C. ELEGANS:184606_AT
cccgtgggctttaattctgtattgtgtttctgttttcgaaataatgatcaactgtttcat
aatgatctactgtttcaaaaatttaaattacaaaacttttgaaacatcagtcccagtgta
cgtgttcttctcaccaataatgtggatgataaccctccgccgatggaaaggaagagtaaa
tccggctccaattgagccggatgactactggaaaatactcacggacacgtggaatcaggt
ttttaactccaaaaatgattcgggtggacttgttgtagctaatgggaggaggaaaaggtt
tgaaacaaaattcaaaactcatagaagttctcatattgaaattagtaatttgcacaaaac
aaaaatgacaaaaaaaataatgtttcaattcccaaaaataagtcattttaattttccgaa
acaattttgcagaattattatcagaataaaaaaacaagttaaaattttgagtttccataa
aatttattgtttcaagtttgtcttgtataatactagaaccatcgtaaatattgatcttgt
acaaagtgtttcttccagaaaccaatcggaaaatgcattctactcaataaccgacacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCGTGGGCTTTAATTCTGTATTGT 357 259 855 Antisense
ATTCTGTATTGTGTTTCTGTTTTCG 525 9 868 Antisense
ACATCAGTCCCAGTGTACGTGTTCT 151 105 958 Antisense
GTACGTGTTCTTCTCACCAATAATG 311 457 972 Antisense
TAATGTGGATGATAACCCTCCGCCG 604 635 992 Antisense
TAACCCTCCGCCGATGGAAAGGAAG 325 627 1004 Antisense
AGAGTAAATCCGGCTCCAATTGAGC 564 67 1027 Antisense
GAGCCGGATGACTACTGGAAAATAC 637 383 1048 Antisense
CACGGACACGTGGAATCAGGTTTTT 477 187 1074 Antisense
GATTCGGGTGGACTTGTTGTAGCTA 451 431 1111 Antisense
TGCATTCTACTCAATAACCGACACG 548 579 1428 Antisense
Sequence Source Affymetrix Proprietary Database