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[184605_at]

Description C01B10.8 /REP_DB=WormBase Gene ID /WP=CE06739 /TR=Q17539 /GB=AAC47920.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 74      6grp_total > 35      4grp_total > 61      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 751
1 2 3 4 range
A 1296.8
(3)
P 		1096.9
(1.4)
P 		1125.3
(1.6)
P 		546
(-3)
P 		751
B 1129.6
(3)
P 		972
(1.4)
P 		890.7
(0.5)
P 		552.2
(-3)
P 		577
C 1172.7
(3)
P 		841.1
(-0.3)
P 		976
(1.1)
P 		565.6
(-3)
P 		607
avr 1199.7
(3) 		970
(0.9) 		997.3
(1.1) 		554.6
(-3) 		645

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 406
1 2 3 4 5 6 range
A 806.2
(3)
P 		726.4
(0.6)
P 		693.9
(-0.4)
P 		673.2
(-1)
P 		605.1
(-3)
P 		681.5
(-0.7)
P 		201
B 773.5
(1.9)
P 		819.5
(3)
P 		589.5
(-2.6)
P 		572
(-3)
P 		571.3
(-3)
P 		697.9
(0.1)
P 		248
C 642.5
(0.1)
P 		637.1
(-0)
P 		841.3
(3)
P 		435.6
(-3)
P 		562.1
(-1.1)
P 		647.3
(0.1)
P 		406
avr 740.7
(3) 		727.7
(2.6) 		708.2
(1.9) 		560.3
(-3) 		579.5
(-2.4) 		675.6
(0.8) 		180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 392
1 2 3 4 range
A 472.2
(3)
P 		238.1
(-0.6)
P 		294.2
(0.3)
P 		79.9
(-3)
P 		392
B 360.2
(3)
P 		240.1
(0)
P 		206.4
(-0.8)
P 		117.7
(-3)
P 		243
C 388.2
(3)
P 		241.8
(0)
P 		340.2
(2)
P 		95.4
(-3)
P 		293
avr 406.9
(3) 		240
(-0.2) 		280.3
(0.5) 		97.7
(-3) 		309

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 148.6
(-3)
P 		258.4
(3)
P 		151.1
(-2.9)
P 		170.7
(-1.8)
P 		182.6
(-1.1)
P 		165.9
(-2.1)
P 		110
B 269.1
(2.8)
P 		272.8
(3)
P 		143.1
(-3)
P 		151.5
(-2.6)
P 		232.1
(1.1)
P 		260.2
(2.4)
P 		130
C 238.1
(3)
P 		194.4
(1.3)
P 		214.1
(2)
P 		87.6
(-3)
P 		181.9
(0.8)
P 		216.7
(2.1)
P 		151
avr 218.6
(1.7) 		241.9
(3) 		169.4
(-1.1) 		136.6
(-3) 		198.9
(0.5) 		214.3
(1.4) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184605_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10876
Sequence Type Exemplar sequence
Representative Public ID C01B10.8 NCBI
Target Description C01B10.8 /REP_DB=WormBase Gene ID /WP=CE06739 /TR=Q17539 /GB=AAC47920.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068623(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068623 NCBI Caenorhabditis elegans C01B10.8 (C01B10.8) mRNA, complete cds. 11/11 None
SNAP00000026861 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6635076:6638003:1 11/11 None
GENEFINDER00000026866 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6635076:6638003:1 11/11 None
C01B10.8.2 ENSEMBL cdna:known chromosome:CEL140:IV:6635023:6638134:1 gene:C01B10.8 11/11 None
C01B10.8.1 ENSEMBL cdna:known chromosome:CEL140:IV:6635073:6638134:1 gene:C01B10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6635081-6638009(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01B10.8
Entrez Gene 177431 Entrez gene
SwissProt Q17539 EMBL-EBI
WormBase CE06739 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:263466_AT expressed protein at
CANINE_2:CFAAFFX.22926.1.S1_S_AT similar to CGI-01 protein isoform 1 cfa
CANINE_2:CFAAFFX.22945.1.S1_S_AT similar to CGI-01 protein isoform 1 cfa
DROSOPHILA_2:1628241_AT dm
DROSGENOME1:153768_AT dm
CHICKEN:GGA.6125.1.S1_AT similar to CGI-01 protein isoform 1 gga
CHICKEN:GGAAFFX.2024.1.S1_S_AT similar to CGI-01 protein isoform 1 gga
HG-U133_PLUS_2:206468_S_AT KIAA0859 hs
HG-FOCUS:206468_S_AT KIAA0859 hs
HG-U133A:206468_S_AT KIAA0859 hs
HG-U133A_2:206468_S_AT KIAA0859 hs
HU35KSUBA:RC_AA227463_AT KIAA0859 hs
HU35KSUBB:RC_H89315_AT KIAA0859 hs
U133_X3P:G7706255_3P_S_AT KIAA0859 hs
U133_X3P:G7706255_3P_AT KIAA0859 hs
U133_X3P:HS.19469.0.S2_3P_AT KIAA0859 hs
U133_X3P:HS.19469.0.S1_3P_A_AT KIAA0859 hs
HG-U133A_2:212405_S_AT KIAA0859 hs
HG-U133_PLUS_2:212405_S_AT KIAA0859 hs
HG-U133A:212405_S_AT KIAA0859 hs
HG-U133A_2:212407_AT KIAA0859 hs
HG-U133_PLUS_2:212407_AT KIAA0859 hs
HG-U133A:212407_AT KIAA0859 hs
HG-U95AV2:32262_AT KIAA0859 hs
MG-U74BV2:113295_AT RIKEN cDNA 5630401D24 gene mm
MOE430A:1423761_AT RIKEN cDNA 5630401D24 gene mm
MOUSE430A_2:1423761_AT RIKEN cDNA 5630401D24 gene mm
MOUSE430_2:1423761_AT RIKEN cDNA 5630401D24 gene mm
MOE430B:1453580_AT RIKEN cDNA 5630401D24 gene mm
MOUSE430_2:1453580_AT RIKEN cDNA 5630401D24 gene mm
MOUSE430_2:1460050_X_AT RIKEN cDNA 5630401D24 gene (5630401D24Rik), mRNA mm
MOE430B:1460050_X_AT RIKEN cDNA 5630401D24 gene (5630401D24Rik), mRNA mm
MU19KSUBA:TC25646_AT RIKEN cDNA 5630401D24 gene (5630401D24Rik), mRNA mm
RAE230A:1389472_AT Similar to RIKEN cDNA 5630401D24 (predicted) rn
RAT230_2:1389472_AT Similar to RIKEN cDNA 5630401D24 (predicted) rn
RG-U34C:RC_AI071555_AT Similar to RIKEN cDNA 5630401D24 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47920 Hypothetical protein C01B10.8 [Caenorhabditis elegans] ref|NP_501024.1| C01B10.8 [Caenorhabditis elegans] 0.0
blast CAE61492 Hypothetical protein CBG05389 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001045 EMBL-EBI Spermine synthase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:184605_AT
gatggctgttcttggattaggtggtggacttttgactgcatatcttgtcagacatttcaa
aaaggctcatgtaaccgctgtggaacttgatccagaagtactcaaaatcgcaaattctca
cttctcgttcccccattcggacgctagaattgacgttgtcatccaagatgctcttattca
tctccaggagactgcaaagaaacctgaagaagagaaatacgatgtgatttttgtggatgt
ttctggaagtcagaacgctgctcttcaatgcccaccatccgccttccttaccccagaagc
tctaggaaatatgaaaaactcggtgaaagaacaaggaatgattagtttgaatttggttac
acgcgattcggaattcggaaagtcgattaaaaagaatatcgcagagtatttcccaactct
ctacacagttctgtccttcgaagatgttaatgagattatcatcggtctcaaaacacccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGCTGTTCTTGGATTAGGTGGT 252 407 1389 Antisense
GGTGGTGGACTTTTGACTGCATATC 520 499 1408 Antisense
AAAAGGCTCATGTAACCGCTGTGGA 414 133 1448 Antisense
TCCCCCATTCGGACGCTAGAATTGA 208 597 1517 Antisense
GACGTTGTCATCCAAGATGCTCTTA 250 379 1540 Antisense
ATGCTCTTATTCATCTCCAGGAGAC 679 41 1556 Antisense
GGAAGTCAGAACGCTGCTCTTCAAT 491 531 1633 Antisense
CTTCCTTACCCCAGAAGCTCTAGGA 123 215 1671 Antisense
GGTTACACGCGATTCGGAATTCGGA 8 507 1743 Antisense
TACACAGTTCTGTCCTTCGAAGATG 538 641 1810 Antisense
TTATCATCGGTCTCAAAACACCCAA 226 675 1844 Antisense
Sequence Source Affymetrix Proprietary Database