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[184604_at]

Description Y57A10C.9 /REP_DB=WormBase Gene ID /WP=CE18421 /TR=O62493 /GB=CAA19551.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 22      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 75.8
(2.1)
P 		51.8
(0)
A 		17.1
(-3)
A 		86.3
(3)
A 		69
B 52.6
(-1.4)
P 		63.4
(-0.1)
A 		39.7
(-3)
A 		89
(3)
P 		49
C 126.5
(3)
P 		8.3
(-2.9)
A 		5.9
(-3)
A 		64.5
(-0.1)
P 		121
avr 85
(3) 		41.2
(-1.1) 		20.9
(-3) 		79.9
(2.5) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 172.2
(3)
A 		46.4
(-1.5)
A 		13.3
(-2.7)
A 		16.2
(-2.6)
A 		20.3
(-2.4)
A 		4.2
(-3)
A 		168
B 101.7
(3)
P 		65.1
(0.6)
A 		41.5
(-0.9)
A 		14
(-2.7)
A 		30.7
(-1.6)
A 		9.4
(-3)
A 		92
C 92.2
(3)
P 		39.2
(-0.6)
A 		3.4
(-3)
A 		39.7
(-0.5)
A 		8.1
(-2.7)
A 		6.5
(-2.8)
A 		89
avr 122
(3) 		50.2
(-0.7) 		19.4
(-2.3) 		23.3
(-2.1) 		19.7
(-2.3) 		6.7
(-3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 27.6
(3)
P 		11.2
(-1.3)
A 		4.5
(-3)
A 		12.6
(-0.9)
A 		23
B 16.8
(1.7)
P 		15.7
(1)
A 		9.2
(-3)
A 		19
(3)
P 		10
C 41.9
(3)
P 		2.4
(-3)
A 		2.1
(-3)
A 		10.9
(-1.7)
P 		40
avr 28.8
(3) 		9.8
(-1.9) 		5.3
(-3) 		14.2
(-0.7) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 31.7
(3)
A 		16.5
(0)
A 		2.9
(-2.6)
A 		4.1
(-2.4)
A 		6.1
(-2)
A 		1
(-3)
A 		31
B 35.4
(3)
P 		21.7
(0.4)
A 		10.1
(-1.8)
A 		3.7
(-3)
A 		12.5
(-1.3)
A 		3.5
(-3)
A 		32
C 34.2
(3)
P 		11.9
(-1)
A 		0.9
(-3)
A 		8
(-1.7)
A 		2.6
(-2.7)
A 		2.2
(-2.8)
A 		33
avr 33.8
(3) 		16.7
(-0.2) 		4.6
(-2.5) 		5.3
(-2.4) 		7.1
(-2.1) 		2.2
(-3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184604_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2758
Sequence Type Exemplar sequence
Representative Public ID Y57A10C.9 NCBI
Target Description Y57A10C.9 /REP_DB=WormBase Gene ID /WP=CE18421 /TR=O62493 /GB=CAA19551.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064241(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064241 NCBI Caenorhabditis elegans Y57A10C.9 (Y57A10C.9) mRNA, complete cds. 11/11 None
GENEFINDER00000005458 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12433511:12435731:-1 11/11 None
Y57A10C.9 ENSEMBL cdna:known chromosome:CEL140:II:12433511:12435749:-1 gene:Y57A10C.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12433507-12435746(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10C.9
Entrez Gene 174882 Entrez gene
SwissProt O62493 EMBL-EBI
WormBase CE18421 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19551 Hypothetical protein Y57A10C.9 [Caenorhabditis elegans] ref|NP_496642.1| Y57A10C.9 [Caenorhabditis elegans] 1.0E-133
blast CAA19551 Hypothetical protein Y57A10C.9 [Caenorhabditis elegans] ref|NP_496642.1| Y57A10C.9 [Caenorhabditis elegans] 1.0E-129
blast CAE73508 Hypothetical protein CBG20966 [Caenorhabditis briggsae] 5.0E-98
blast CAE73508 Hypothetical protein CBG20966 [Caenorhabditis briggsae] 8.0E-96
blast CAA19549 Hypothetical protein Y57A10C.7 [Caenorhabditis elegans] ref|NP_496641.2| Y57A10C.7 [Caenorhabditis elegans] 2.0E-50
blast CAA19549 Hypothetical protein Y57A10C.7 [Caenorhabditis elegans] ref|NP_496641.2| Y57A10C.7 [Caenorhabditis elegans] 6.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496642.1 5 10-32,53-75,102-124,154-173,188-210
Y57A10C.9 5 10-32,53-75,102-124,154-173,188-210
GENEFINDER00000005458 5 5-27,47-69,96-118,148-167,182-204
Sequence
Target Sequence 
>C. ELEGANS:184604_AT
atacgatcgctggttttctaattgttatcatgagtatgttcgttttcgcgggaattcgaa
aaatctccgcaaggaaaattggcgctacgacatcaagttcaaaatcctccagtgtgttcc
ggcaggctaaccggattactgtaggcattctattttgctctttgttttttgtgacaatcc
cgtcgttattggtgacgggttacgaggaagtgaccggagtgtcgttgttcgccgagctcg
gcccgttttatatttgtgcgattttggtgaatggatttgccgacggcctagtcttcgtga
tcatcaaccgaaaacaaatcggatccacgaatcgaacgctctcctcaacggtgagcacta
tgccaaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACGATCGCTGGTTTTCTAATTGT 525 23 338 Antisense
GAGTATGTTCGTTTTCGCGGGAATT 408 391 369 Antisense
AATTGGCGCTACGACATCAAGTTCA 387 177 414 Antisense
TCAAAATCCTCCAGTGTGTTCCGGC 9 631 436 Antisense
GTGACAATCCCGTCGTTATTGGTGA 134 483 508 Antisense
AAGTGACCGGAGTGTCGTTGTTCGC 291 159 545 Antisense
GCTCGGCCCGTTTTATATTTGTGCG 612 297 573 Antisense
TGGATTTGCCGACGGCCTAGTCTTC 319 549 609 Antisense
CCTAGTCTTCGTGATCATCAACCGA 552 267 624 Antisense
ATCGGATCCACGAATCGAACGCTCT 276 35 655 Antisense
TCAACGGTGAGCACTATGCCAACCC 349 629 682 Antisense
Sequence Source Affymetrix Proprietary Database