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[184603_at]

Description C18B10.4 /REP_DB=WormBase Gene ID /WP=CE08298 /TR=P91074 /GB=AAK18889.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 12      6grp_total > 03      4grp_total > 12      6grp_cgc > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 92.8
(-1.4)
M 		69.5
(-2.3)
P 		52.2
(-3)
A 		207.9
(3)
P 		156
B 104.9
(0.4)
P 		101.3
(0)
P 		71
(-3)
A 		131
(3)
P 		60
C 111.9
(0.1)
P 		91.5
(-0.9)
A 		44.9
(-3)
P 		176.3
(3)
P 		131
avr 103.2
(-0.6) 		87.4
(-1.4) 		56
(-3) 		171.7
(3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 91.7
(3)
P 		46.5
(-0.4)
A 		63.4
(0.9)
A 		44.4
(-0.5)
M 		79.8
(2.1)
A 		11.1
(-3)
A 		81
B 48.8
(-3)
M 		71.7
(3)
P 		60.7
(0.1)
P 		70
(2.6)
A 		51.7
(-2.2)
A 		52.5
(-2)
A 		23
C 39.1
(-1.6)
A 		97.4
(3)
P 		42.3
(-1.3)
A 		92.5
(2.6)
A 		21.1
(-3)
A 		46.7
(-1)
A 		76
avr 59.9
(0.9) 		71.9
(3) 		55.5
(0.2) 		69
(2.5) 		50.9
(-0.6) 		36.8
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 33.8
(3)
M 		15.1
(-2.6)
P 		13.6
(-3)
A 		30.4
(2)
P 		20
B 33.4
(3)
P 		25
(0)
P 		16.5
(-3)
A 		27.9
(1)
P 		17
C 37
(3)
P 		26.3
(-0)
A 		15.7
(-3)
P 		29.7
(0.9)
P 		21
avr 34.7
(3) 		22.1
(-0.9) 		15.3
(-3) 		29.3
(1.3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 16.9
(1)
P 		16.5
(0.9)
A 		13.8
(0.1)
A 		11.3
(-0.6)
M 		24.1
(3)
A 		2.7
(-3)
A 		21
B 17
(-1.5)
M 		23.9
(3)
P 		14.7
(-3)
P 		18.5
(-0.5)
A 		21
(1.1)
A 		19.6
(0.2)
A 		9
C 14.5
(-1)
A 		29.7
(3)
P 		10.8
(-2)
A 		18.6
(0.1)
A 		6.8
(-3)
A 		15.6
(-0.7)
A 		23
avr 16.1
(-1.1) 		23.4
(3) 		13.1
(-2.7) 		16.1
(-1.1) 		17.3
(-0.4) 		12.6
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184603_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12421
Sequence Type Exemplar sequence
Representative Public ID C18B10.4 NCBI
Target Description C18B10.4 /REP_DB=WormBase Gene ID /WP=CE08298 /TR=P91074 /GB=AAK18889.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072525
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C18B10.4 ENSEMBL cdna:known chromosome:CEL140:V:7488739:7490203:-1 gene:C18B10.4 None
NM_072525 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-7) (srbc-7) mRNA, complete cds. None
GENEFINDER00000031948 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7488169:7490203:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072524 8/11 Cross Hyb Matching Probes None
GENEFINDER00000031952 8/11 Cross Hyb Matching Probes None
C18B10.5 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7486860-7490304(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-7
Ensembl C18B10.4
Entrez Gene 182771 Entrez gene
SwissProt Q5DX29 EMBL-EBI
WormBase CE38036 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAW88409 Serpentine receptor, class bc (class b-like) protein 7 [Caenorhabditis elegans] ref|NP_504926.2| Serpentine Receptor, class BC (class B-like) family member (srbc-7) [Caenorhabditis elegans] 1.0E-145
blast E89103 protein C18B10.4 [imported] - Caenorhabditis elegans 1.0E-130
blast AAW88410 Serpentine receptor, class bc (class b-like) protein 8 [Caenorhabditis elegans] ref|NP_504925.2| Serpentine Receptor, class BC (class B-like) family member (srbc-8) [Caenorhabditis elegans] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.1E-106
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504926.2 5 15-36,49-71,86-108,128-150,185-204
C18B10.4 5 15-36,49-71,86-108,128-150,185-204
GENEFINDER00000031948 8 15-36,49-71,86-108,128-150,185-204,217-239,254-273,286-305
Sequence
Target Sequence 
>C. ELEGANS:184603_AT
aatcccactgttcagcttcaaggtcggagttttccttgctcttgaaaacatgtcctcttc
acaaggaggtccattgatgagtgtacaagcggttttgataacatcccttggagtaatttc
ttctattttcacaactattatgaacgtctattttataaaaaagattggaaaaactcgtca
taagatgattctcttcttctaccgtctctttctcgacgtaacgtataatgtttttgcttg
cgcatatatgactttctcaattttgtattcatttttcaccgaagagctccgtgagcagca
agtttttattgtttacgttgggtttccacttcaaacagttggagctataagaacagttgt
tgcgctggcgatttcactggaaagggttttggctatttacacaccaatcatgttccataa
tcaccgccatttgtgcccttctattttaattttaatgttttctattttcatgggattgtt
tgaaaaccttattttatacctattttgtactttgaatattcccgcaattccacgagactg
tgctgttatgcgttgttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCCACTGTTCAGCTTCAAGGTC 16 167 795 Antisense
CAAGGTCGGAGTTTTCCTTGCTCTT 86 183 813 Antisense
GCTCTTGAAAACATGTCCTCTTCAC 325 301 832 Antisense
AAGCGGTTTTGATAACATCCCTTGG 296 147 881 Antisense
GCTTGCGCATATATGACTTTCTCAA 381 307 1030 Antisense
TTCATTTTTCACCGAAGAGCTCCGT 623 687 1062 Antisense
GTTGTTGCGCTGGCGATTTCACTGG 131 439 1150 Antisense
GTTCCATAATCACCGCCATTTGTGC 529 441 1206 Antisense
CCATTTGTGCCCTTCTATTTTAATT 660 269 1221 Antisense
CCCGCAATTCCACGAGACTGTGCTG 403 261 1315 Antisense
GACTGTGCTGTTATGCGTTGTTCAA 357 375 1330 Antisense
Sequence Source Affymetrix Proprietary Database