[Home] | [Total List]

[184602_at]

Description C10H11.3 /REP_DB=WormBase Gene ID /WP=CE08092 /TR=P91039 /GB=AAB42343.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 54      6grp_total > 74      4grp_total > 32      6grp_highest_sub > 04_05_06      6grp_cgc > 66      6grp_high1_sub > In      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1158
1 2 3 4 range
A 193.5
(-3)
P 		873.3
(0.9)
P 		1233.8
(3)
P 		1036.9
(1.9)
P 		1040
B 168.6
(-3)
P 		1059.5
(2)
P 		1245.2
(3)
P 		1156.1
(2.5)
P 		1077
C 163.6
(-3)
P 		1080.5
(1.7)
P 		1321.9
(3)
P 		1143.4
(2.1)
P 		1158
avr 175.2
(-3) 		1004.4
(1.6) 		1267
(3) 		1112.1
(2.1) 		1092

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1233
1 2 3 4 5 6 range
A 283.8
(-3)
P 		1077
(1.1)
P 		1302.4
(2.2)
P 		1458.2
(3)
P 		1397.8
(2.7)
P 		1384.1
(2.6)
P 		1174
B 319.1
(-3)
P 		1082.6
(1.2)
P 		1233.3
(2)
P 		1290.5
(2.3)
P 		1350.2
(2.6)
P 		1415.6
(3)
P 		1097
C 316.5
(-3)
P 		997.8
(0.4)
P 		1196.2
(1.4)
P 		1243.6
(1.6)
P 		1260.2
(1.7)
P 		1516.6
(3)
P 		1200
avr 306.5
(-3) 		1052.5
(1) 		1244
(2) 		1330.8
(2.4) 		1336.1
(2.5) 		1438.8
(3) 		1132
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 407
1 2 3 4 range
A 70.4
(-3)
P 		189.6
(-0.2)
P 		322.5
(3)
P 		151.8
(-1.1)
P 		252
B 53.8
(-3)
P 		261.7
(2.3)
P 		288.5
(3)
P 		246.4
(1.9)
P 		235
C 54.2
(-3)
P 		310.7
(0.8)
P 		460.7
(3)
P 		192.8
(-1)
P 		407
avr 59.5
(-3) 		254
(0.9) 		357.2
(3) 		197
(-0.2) 		298

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 496
1 2 3 4 5 6 range
A 52.3
(-3)
P 		383
(2.4)
P 		283.6
(0.8)
P 		369.8
(2.2)
P 		421.8
(3)
P 		337
(1.6)
P 		370
B 111
(-3)
P 		360.4
(0.4)
P 		299.5
(-0.4)
P 		341.8
(0.2)
P 		548.6
(3)
P 		527.9
(2.7)
P 		438
C 117.3
(-3)
P 		304.5
(-0.1)
P 		304.5
(-0.1)
P 		250.1
(-1)
P 		407.8
(1.5)
P 		507.7
(3)
P 		390
avr 93.5
(-3) 		349.3
(1.2) 		295.9
(0.3) 		320.6
(0.7) 		459.4
(3) 		457.5
(3) 		366
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184602_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.571
Sequence Type Exemplar sequence
Representative Public ID C10H11.3 NCBI
Target Description C10H11.3 /REP_DB=WormBase Gene ID /WP=CE08092 /TR=P91039 /GB=AAB42343.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059037(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059037 NCBI Caenorhabditis elegans C10H11.3 (C10H11.3) mRNA, complete cds. 11/11 None
GENEFINDER00000015962 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4721216:4735230:1 11/11 None
SNAP00000015954 ENSEMBL cdna:SNAP chromosome:CEL140:I:4731624:4737879:1 11/11 None
C10H11.3 ENSEMBL cdna:known chromosome:CEL140:I:4731605:4735257:1 gene:C10H11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4731623-4735230(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ugt-25
Ensembl C10H11.3
Entrez Gene 172087 Entrez gene
SwissProt P91039 EMBL-EBI
WormBase CE08092 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB42343 Udp-glucuronosyltransferase protein 25 [Caenorhabditis elegans] ref|NP_491438.1| C10H11.3 [Caenorhabditis elegans] 0.0
blast CAE60364 Hypothetical protein CBG03962 [Caenorhabditis briggsae] 0.0
blast CAE58276 Hypothetical protein CBG01383 [Caenorhabditis briggsae] 0.0
blast AAB42345 Udp-glucuronosyltransferase protein 27 [Caenorhabditis elegans] ref|NP_491436.1| C10H11.5 [Caenorhabditis elegans] 0.0
blast AAB42344 Udp-glucuronosyltransferase protein 28 [Caenorhabditis elegans] ref|NP_491437.1| C10H11.4 [Caenorhabditis elegans] 0.0
blast AAB42350 Udp-glucuronosyltransferase protein 26 [Caenorhabditis elegans] ref|NP_491435.2| C10H11.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.9E-6
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 8.8E-14
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.0E-17
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.8E-15
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.7E-20
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.9E-6
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.3E-18
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 8.8E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491438.1 2 7-29,491-513
C10H11.3 2 7-29,491-513
GENEFINDER00000015962 3 509-531,998-1020,1987-2009
SNAP00000015954 2 7-29,495-517
Sequence
Target Sequence 
>C. ELEGANS:184602_AT
aggccatcaaatccgagccaaatgtcacatttatttggaaatatgaaaatgacaatttgg
aatgggcaaaaggaattcaaaatatttatttttcaaaatgggttcctcaaacagctcttc
taaatgatgctcgattaactgcattcatgactcacggaggtcttggatcaacgaatgaat
tggcttttcttggaaaacctgcacttatggttccagtatttgctgatcaagatagaaatg
cgaatatgcttgcaaggcatggaggtgttctagttgttcataaaaaagagctcggaaact
ttaaaacaatcaaatcttcgattcgatcgatacttcacgaagaaaagtatcagaaaaatg
ctcgaaaattgtcagaactcttgaataatcagccattgaagccaaaggaacaagtcgtga
agtacacggaattcgtcgccaaattcggaccatttccacaaatggattcatatggaaggc
agctgggatttattcagagaaatctaattgatatttatgcagctattagtttatcctatc
ttttcgtcatttcccttatctattttgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGCCATCAAATCCGAGCCAAATGT 448 53 980 Antisense
TAACTGCATTCATGACTCACGGAGG 379 639 1115 Antisense
CACGGAGGTCTTGGATCAACGAATG 505 199 1132 Antisense
AAACCTGCACTTATGGTTCCAGTAT 44 127 1174 Antisense
GCTTGCAAGGCATGGAGGTGTTCTA 438 303 1227 Antisense
GGAGGTGTTCTAGTTGTTCATAAAA 310 517 1240 Antisense
TTCGATTCGATCGATACTTCACGAA 451 693 1296 Antisense
GAAGTACACGGAATTCGTCGCCAAA 190 337 1398 Antisense
CCAAATTCGGACCATTTCCACAAAT 704 275 1418 Antisense
TAGTTTATCCTATCTTTTCGTCATT 486 653 1506 Antisense
CGTCATTTCCCTTATCTATTTTGTA 396 245 1524 Antisense
Sequence Source Affymetrix Proprietary Database