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[184601_at]

Description Y39C12A.8 /REP_DB=WormBase Gene ID /WP=CE24236 /TR=Q9U2L4 /GB=CAB60492.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 02      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 2.2
(-3)
A 		34.2
(-1.8)
A 		31.3
(-1.9)
A 		160.3
(3)
P 		158
B 34.5
(-1.9)
A 		10.3
(-3)
A 		12.1
(-2.9)
A 		139.7
(3)
P 		129
C 35.6
(-2.8)
A 		44.5
(-2.5)
A 		29.4
(-3)
A 		199.8
(3)
P 		170
avr 24.1
(-3) 		29.7
(-2.8) 		24.3
(-3) 		166.6
(3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 42.1
(-3)
A 		47.4
(-2.8)
P 		68.1
(-1.9)
P 		58.9
(-2.3)
P 		130.2
(0.7)
P 		183.7
(3)
P 		142
B 50.2
(-2.7)
A 		36.6
(-3)
P 		44.7
(-2.8)
A 		81.3
(-1.9)
P 		199.9
(1.2)
P 		271.5
(3)
P 		235
C 27.1
(-2.7)
A 		48.3
(-2.2)
P 		16.6
(-3)
A 		63.2
(-1.9)
P 		151.5
(0.2)
P 		267
(3)
P 		250
avr 39.8
(-3) 		44.1
(-2.9) 		43.1
(-2.9) 		67.8
(-2.2) 		160.5
(0.6) 		240.7
(3) 		201
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 0.8
(-3)
A 		7.4
(-1.3)
A 		8.2
(-1)
A 		23.5
(3)
P 		23
B 11
(-1.1)
A 		2.5
(-3)
A 		2.8
(-2.9)
A 		29.8
(3)
P 		27
C 11.8
(-2.6)
A 		12.8
(-2.3)
A 		10.2
(-3)
A 		33.7
(3)
P 		24
avr 7.9
(-2.8) 		7.6
(-2.9) 		7.1
(-3) 		29
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 7.8
(-3)
A 		16.9
(-1.5)
P 		14.8
(-1.9)
P 		14.9
(-1.8)
P 		39.3
(2.1)
P 		44.7
(3)
P 		37
B 17.5
(-2.6)
A 		12.2
(-2.9)
P 		10.8
(-3)
A 		21.5
(-2.3)
P 		81.2
(1.7)
P 		101.2
(3)
P 		90
C 10.1
(-2.6)
A 		14.7
(-2.3)
P 		4.2
(-3)
A 		12.7
(-2.4)
P 		49
(0.2)
P 		89.4
(3)
P 		85
avr 11.8
(-2.8) 		14.6
(-2.6) 		9.9
(-3) 		16.4
(-2.4) 		56.5
(1.1) 		78.4
(3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184601_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8392
Sequence Type Exemplar sequence
Representative Public ID Y39C12A.8 NCBI
Target Description Y39C12A.8 /REP_DB=WormBase Gene ID /WP=CE24236 /TR=Q9U2L4 /GB=CAB60492.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069925(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069925 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-26) (dnj-26) mRNA, complete cds. 11/11 None
GENEFINDER00000019631 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12240202:12252619:-1 11/11 None
Y39C12A.8 ENSEMBL cdna:known chromosome:CEL140:IV:12251219:12252619:-1 gene:Y39C12A.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019624 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12251224-12252625(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dnj-26
Ensembl Y39C12A.8
Entrez Gene 178171 Entrez gene
SwissProt Q9U2L4 EMBL-EBI
WormBase CE24236 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6457 protein folding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60492 Hypothetical protein Y39C12A.8 [Caenorhabditis elegans] ref|NP_502326.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-26) [Caenorhabditis elegans] 1.0E-177
blast CAB60492 Hypothetical protein Y39C12A.8 [Caenorhabditis elegans] ref|NP_502326.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-26) [Caenorhabditis elegans] 1.0E-170
blast CAB60493 Hypothetical protein Y39C12A.7 [Caenorhabditis elegans] ref|NP_502325.2| Serpentine Receptor, class E (epsilon) family member (sre-15) [Caenorhabditis elegans] 1.0E-100
blast CAE62209 Hypothetical protein CBG06259 [Caenorhabditis briggsae] 4.0E-86
blast CAA97416 Hypothetical protein B0035.14 [Caenorhabditis elegans] ref|NP_502122.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-1) [Caenorhabditis elegans] 3.0E-21
blast CAE62048 Hypothetical protein CBG06064 [Caenorhabditis briggsae] 6.0E-21
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 8.99999968283527E-24
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 1.00000001954148E-24
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 1.4E-26
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 6.2E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502326.1 3 255-277,292-314,326-348
Y39C12A.8 3 255-277,292-314,326-348
GENEFINDER00000019631 8 255-277,292-314,326-348,363-385,405-427,432-454,488-510,520-542
Sequence
Target Sequence 
>C. ELEGANS:184601_AT
aattatcagtcttatcagcaacaacaacaaaatcagtacgcaaggcgacgacatgaagaa
tatacagatggattcaaatattcgtcaagttcaaatccacactctaccagcaatgagcct
tttcacgataaatctcataattccgatgttgagaaagaggagtatcttgttgttatcttt
ttcattgtagtgacgattgttctatttggattaattgtacatggaatgtacaccggaagc
cttttgcgaactgttttcaaccttgtcataacatatttgagaatcatagctggaattttt
ggagtattttgttggatctcatggaaaatattccaattgatcgtgaacctttcctggaaa
agtgttacaaggatagcaattcctgttgttttaaaaacgatttcaattactgctgaagta
gtttcgagctgttttggtttcttgtggagcttttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTATCAGTCTTATCAGCAACAAC 596 175 610 Antisense
GTCAAGTTCAAATCCACACTCTACC 351 463 693 Antisense
CACTCTACCAGCAATGAGCCTTTTC 88 199 709 Antisense
GAGCCTTTTCACGATAAATCTCATA 565 385 724 Antisense
GGAGTATCTTGTTGTTATCTTTTTC 559 517 768 Antisense
ACATGGAATGTACACCGGAAGCCTT 414 97 828 Antisense
ACACCGGAAGCCTTTTGCGAACTGT 200 109 839 Antisense
TGCGAACTGTTTTCAACCTTGTCAT 670 583 854 Antisense
TCCAATTGATCGTGAACCTTTCCTG 465 587 941 Antisense
GTAGTTTCGAGCTGTTTTGGTTTCT 145 457 1027 Antisense
TTTGGTTTCTTGTGGAGCTTTTCGA 230 665 1042 Antisense
Sequence Source Affymetrix Proprietary Database