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[184600_s_at]

Description C01B10.6 /REP_DB=WormBase Gene ID /WP=CE27575 /TR=Q17537 /GB=AAC47918.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 61      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 35      6grp_total > 62      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2840
1 2 3 4 range
A 3655.4
(1.4)
P 		3833.8
(1.8)
P 		4353.3
(3)
P 		1738.6
(-3)
P 		2615
B 3943.5
(1.6)
P 		3793.9
(1.3)
P 		4542.4
(3)
P 		1952.8
(-3)
P 		2590
C 3808.9
(1.8)
P 		3795.9
(1.8)
P 		4316.9
(3)
P 		1702.7
(-3)
P 		2614
avr 3802.6
(1.6) 		3807.9
(1.6) 		4404.2
(3) 		1798
(-3) 		2606

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1796
1 2 3 4 5 6 range
A 3068.5
(0.5)
P 		3286.6
(1.6)
P 		3498.1
(2.7)
P 		3553.8
(3)
P 		3434.5
(2.4)
P 		2388.2
(-3)
P 		1166
B 2749.4
(-2.2)
P 		3321.5
(-0.1)
P 		4184.1
(3)
P 		4157.7
(2.9)
P 		3100.8
(-0.9)
P 		2512.7
(-3)
P 		1671
C 2524.1
(-3)
P 		3089.7
(-0.9)
P 		3869.8
(2)
P 		4149.3
(3)
P 		3409.2
(0.3)
P 		3128.5
(-0.8)
P 		1625
avr 2780.7
(-2.5) 		3232.6
(-0.4) 		3850.7
(2.5) 		3953.6
(3) 		3314.8
(-0) 		2676.5
(-3) 		1277
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1250
1 2 3 4 range
A 1330.9
(3)
P 		832.2
(0.2)
P 		1138
(1.9)
P 		254.5
(-3)
P 		1076
B 1257.5
(3)
P 		937
(0.7)
P 		1052.6
(1.5)
P 		416.1
(-3)
P 		841
C 1260.9
(1.8)
P 		1091.3
(1)
P 		1504.6
(3)
P 		287.1
(-3)
P 		1218
avr 1283.1
(3) 		953.5
(0.9) 		1231.7
(2.7) 		319.2
(-3) 		964

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 694
1 2 3 4 5 6 range
A 565.6
(-3)
P 		1168.9
(3)
P 		761.8
(-1)
P 		901.3
(0.3)
P 		1036.4
(1.7)
P 		581.5
(-2.8)
P 		603
B 956.7
(-2.6)
P 		1105.6
(0.1)
P 		1016
(-1.5)
P 		1101.2
(0.1)
P 		1259.8
(3)
P 		937
(-3)
P 		323
C 935.6
(-0.7)
P 		942.7
(-0.6)
P 		984.9
(0.4)
P 		834.4
(-3)
P 		1103.2
(3)
P 		1047.3
(1.8)
P 		269
avr 819.3
(-3) 		1072.4
(1.8) 		920.9
(-1.1) 		945.6
(-0.6) 		1133.1
(3) 		855.3
(-2.3) 		314
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184600_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11222
Sequence Type Exemplar sequence
Representative Public ID C01B10.6 NCBI
Target Description C01B10.6 /REP_DB=WormBase Gene ID /WP=CE27575 /TR=Q17537 /GB=AAC47918.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171366(10), NM_171910(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171366 NCBI Caenorhabditis elegans C01B10.6a (C01B10.6) mRNA, complete cds. 10/11 None
NM_171910 NCBI Caenorhabditis elegans C01B10.6b (C01B10.6) mRNA, complete cds. 11/11 None
SNAP00000026862 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6641496:6645120:1 10/11 None
GENEFINDER00000026872 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6638563:6645184:1 11/11 None
C01B10.6a.2 ENSEMBL cdna:known chromosome:CEL140:IV:6640145:6645120:1 gene:C01B10.6 10/11 None
C01B10.6b ENSEMBL cdna:known chromosome:CEL140:IV:6640164:6645336:1 gene:C01B10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6640169-6645190(+) 100.0 100.0
Public Domain and Genome References
Ensembl C01B10.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM75377 Hypothetical protein C01B10.6b [Caenorhabditis elegans] ref|NP_741429.1| C01B10.6b [Caenorhabditis elegans] 1.0E-172
blast AAC47918 Hypothetical protein C01B10.6a [Caenorhabditis elegans] ref|NP_741428.1| C01B10.6a [Caenorhabditis elegans] 1.0E-170
blast AAM75377 Hypothetical protein C01B10.6b [Caenorhabditis elegans] ref|NP_741429.1| C01B10.6b [Caenorhabditis elegans] 1.0E-170
blast AAM75377 Hypothetical protein C01B10.6b [Caenorhabditis elegans] ref|NP_741429.1| C01B10.6b [Caenorhabditis elegans] 1.0E-168
blast AAC47918 Hypothetical protein C01B10.6a [Caenorhabditis elegans] ref|NP_741428.1| C01B10.6a [Caenorhabditis elegans] 1.0E-168
Sequence
Target Sequence 
>C. ELEGANS:184600_S_AT
accatctgtatgccctacaactgttgctccgacaaccaccccagctcttctgacatctac
tattgcaccgactgcagacgttacttccgctactaatgcagctggatcaaccggagcaac
cggctcttcagctactggaagcactgtcacctcagacgttgcttcttcttctgctactgg
agtggtaatagtttggcacccttgcaataaatctttatttcaggaagctccaccaatgca
acagatacgacccaatcatcaacagacgcaagtactgtatcaacatcttcaacttcttaa
aatgccagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCATCTGTATGCCCTACAACTGTT 664 83 1140 Antisense
GCTCTTCTGACATCTACTATTGCAC 594 299 1183 Antisense
TTGCACCGACTGCAGACGTTACTTC 586 691 1202 Antisense
GTTACTTCCGCTACTAATGCAGCTG 518 445 1219 Antisense
AATGCAGCTGGATCAACCGGAGCAA 355 165 1234 Antisense
TCAACCGGAGCAACCGGCTCTTCAG 29 629 1246 Antisense
GAAGCTCCACCAATGCAACAGATAC 412 343 1363 Antisense
GCAACAGATACGACCCAATCATCAA 595 319 1377 Antisense
GACCCAATCATCAACAGACGCAAGT 532 381 1388 Antisense
GCAAGTACTGTATCAACATCTTCAA 372 321 1407 Antisense
ATCTTCAACTTCTTAAAATGCCAGT 644 31 1424 Antisense
Sequence Source Affymetrix Proprietary Database