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[184599_at]

Description C01B10.6 /REP_DB=WormBase Gene ID /WP=CE27575 /TR=Q17537 /GB=AAC47918.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 80      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 44      6grp_total > 81      4grp_total > 60      6grp_highest_sub > 04_05      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2286
1 2 3 4 range
A 2277.7
(2)
P 		1625.4
(0.1)
P 		2605.7
(3)
P 		575.9
(-3)
P 		2030
B 2096.9
(0.7)
P 		1942.8
(0.2)
P 		2782.4
(3)
P 		966.8
(-3)
P 		1816
C 2364.3
(1.6)
P 		1736.6
(-0.1)
P 		2862.3
(3)
P 		692.5
(-3)
P 		2170
avr 2246.3
(1.5) 		1768.3
(0.1) 		2750.1
(3) 		745.1
(-3) 		2005

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1936
1 2 3 4 5 6 range
A 1145.8
(-1.4)
P 		2152.2
(3)
P 		1528.1
(0.2)
P 		1762.9
(1.3)
P 		1933.8
(2)
P 		793.7
(-3)
P 		1359
B 1191.5
(-3)
P 		1864
(-0.4)
P 		1727.6
(-0.9)
P 		2729.2
(3)
P 		1961
(0)
P 		1864.1
(-0.4)
P 		1538
C 1617.5
(-2.3)
P 		1759.6
(-1.2)
P 		2040.5
(0.9)
P 		2311.9
(3)
P 		2123.4
(1.6)
P 		1521.4
(-3)
P 		791
avr 1318.3
(-3) 		1925.3
(0.8) 		1765.4
(-0.2) 		2268
(3) 		2006.1
(1.3) 		1393.1
(-2.5) 		950
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 913
1 2 3 4 range
A 829.3
(3)
P 		352.8
(-0.8)
P 		681.2
(1.8)
P 		84.3
(-3)
P 		745
B 668.7
(3)
P 		479.8
(0.6)
P 		644.8
(2.7)
P 		206
(-3)
P 		463
C 782.7
(1.5)
P 		499.3
(-0.4)
P 		997.6
(3)
P 		116.8
(-3)
P 		881
avr 760.2
(2.9) 		444
(-0.1) 		774.5
(3) 		135.7
(-3) 		639

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 604
1 2 3 4 5 6 range
A 211.2
(-2.8)
P 		765.4
(3)
P 		332.8
(-1.5)
P 		447.1
(-0.3)
P 		583.5
(1.1)
P 		193.2
(-3)
P 		572
B 414.6
(-3)
P 		620.4
(0.2)
P 		419.5
(-2.9)
P 		722.9
(1.8)
P 		796.7
(3)
P 		695.1
(1.4)
P 		382
C 599.5
(0.6)
P 		536.9
(-1.1)
P 		519.3
(-1.5)
P 		464.9
(-3)
P 		687.1
(3)
P 		509.3
(-1.8)
P 		222
avr 408.4
(-3) 		640.9
(2) 		423.9
(-2.7) 		545
(-0.1) 		689.1
(3) 		465.9
(-1.8) 		281
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184599_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11222
Sequence Type Exemplar sequence
Representative Public ID C01B10.6 NCBI
Target Description C01B10.6 /REP_DB=WormBase Gene ID /WP=CE27575 /TR=Q17537 /GB=AAC47918.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171910, NM_171366
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000026872 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6638563:6645184:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171366 8/11 Cross Hyb Matching Probes A 
NM_171910 8/11 Cross Hyb Matching Probes A 
SNAP00000026862 8/11 Cross Hyb Matching Probes None
C01B10.6a.2 8/11 Cross Hyb Matching Probes None
C01B10.6b 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6640169-6645190(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47918 Hypothetical protein C01B10.6a [Caenorhabditis elegans] ref|NP_741428.1| C01B10.6a [Caenorhabditis elegans] 1.0E-168
blast AAM75377 Hypothetical protein C01B10.6b [Caenorhabditis elegans] ref|NP_741429.1| C01B10.6b [Caenorhabditis elegans] 1.0E-166
blast CAE61490 Hypothetical protein CBG05387 [Caenorhabditis briggsae] 1.0E-107
Sequence
Target Sequence 
>C. ELEGANS:184599_AT
tatcaaactacacgttctccggtttccaacaagttgatgtttattactactcgggaccac
gatcgactgttcagttcaactttgattatgtcgaagtgaacaactgtaagctcaactgta
ccggggataatggaaagtgcatagttagtcagtctggccagcagtactgtgaatgcaaaa
agtgcgaatttagtggaacaaattgtgaaacaacacccgttccaccggttgctccaacac
caccatctgtatgccctacaactgttgctccgacaaccaccccagctcttctgacatcta
ctattgcaccgactgcagacgttacttccgctactaatgcagctggatcaaccggagcaa
ccggctcttcagctactggaagcactgtcacctcagacgttgcttcttcttctgctactg
gagtggtaatagtttggcacccttgcaataaatctttatttcaggaagctccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCAAACTACACGTTCTCCGGTTT 457 657 899 Antisense
GTTCTCCGGTTTCCAACAAGTTGAT 299 441 912 Antisense
GATGTTTATTACTACTCGGGACCAC 407 407 934 Antisense
TTACTACTCGGGACCACGATCGACT 405 679 942 Antisense
CACGATCGACTGTTCAGTTCAACTT 36 201 956 Antisense
AACTGTAAGCTCAACTGTACCGGGG 380 141 1000 Antisense
GTGCATAGTTAGTCAGTCTGGCCAG 139 481 1035 Antisense
GTCAGTCTGGCCAGCAGTACTGTGA 193 467 1046 Antisense
GTGGTAATAGTTTGGCACCCTTGCA 494 485 1321 Antisense
TGGCACCCTTGCAATAAATCTTTAT 589 545 1333 Antisense
AATCTTTATTTCAGGAAGCTCCACC 140 169 1349 Antisense
Sequence Source Affymetrix Proprietary Database