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[184598_at]

Description F58E1.10 /REP_DB=WormBase Gene ID /WP=CE11390 /TR=Q9TZG2 /GB=AAC67487.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 1.4
(-3)
A 		3.9
(-2.6)
A 		5
(-2.5)
A 		43
(3)
A 		42
B 2.2
(-2)
A 		1.9
(-2.6)
A 		1.7
(-3)
A 		4.8
(3)
A 		3
C 1.9
(-2.9)
A 		2.7
(-2.8)
A 		1.3
(-3)
A 		37.7
(3)
A 		36
avr 1.8
(-3) 		2.8
(-2.8) 		2.7
(-2.8) 		28.5
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 2.4
(-2.7)
A 		2.3
(-2.7)
A 		2.4
(-2.7)
A 		2
(-2.8)
A 		1.1
(-3)
A 		28.2
(3)
A 		27
B 5.5
(3)
A 		3.7
(0.4)
A 		2.6
(-1.2)
A 		1.9
(-2.3)
A 		1.4
(-3)
A 		5.1
(2.4)
A 		4
C 1.3
(-2.8)
A 		1.3
(-2.8)
A 		2.2
(-2.5)
A 		2.1
(-2.5)
A 		0.9
(-3)
A 		16.7
(3)
A 		16
avr 3.1
(-2.2) 		2.4
(-2.5) 		2.4
(-2.5) 		2
(-2.7) 		1.1
(-3) 		16.7
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.5
(-3)
A 		0.8
(-2.7)
A 		1.3
(-2.2)
A 		6.3
(3)
A 		6
B 0.7
(-0)
A 		0.5
(-2)
A 		0.4
(-3)
A 		1
(3)
A 		1
C 0.6
(-2.9)
A 		0.8
(-2.7)
A 		0.5
(-3)
A 		6.4
(3)
A 		6
avr 0.6
(-3) 		0.7
(-2.9) 		0.7
(-2.9) 		4.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.4
(-2.9)
A 		0.8
(-2.5)
A 		0.5
(-2.8)
A 		0.5
(-2.8)
A 		0.3
(-3)
A 		6.9
(3)
A 		7
B 1.9
(3)
A 		1.2
(-0)
A 		0.6
(-2.6)
A 		0.5
(-3)
A 		0.6
(-2.6)
A 		1.9
(3)
A 		1
C 0.5
(-2.8)
A 		0.4
(-2.9)
A 		0.6
(-2.7)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		5.6
(3)
A 		5
avr 0.9
(-2.3) 		0.8
(-2.5) 		0.6
(-2.7) 		0.5
(-2.9) 		0.4
(-3) 		4.8
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184598_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5685
Sequence Type Exemplar sequence
Representative Public ID F58E1.10 NCBI
Target Description F58E1.10 /REP_DB=WormBase Gene ID /WP=CE11390 /TR=Q9TZG2 /GB=AAC67487.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061642(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061642 NCBI Caenorhabditis elegans F58E1.10 (F58E1.10) mRNA, complete cds. 11/11 None
SNAP00000040829 ENSEMBL cdna:SNAP chromosome:CEL140:II:1689742:1691080:-1 10/11 None
GENEFINDER00000040837 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1689742:1691080:-1 10/11 None
F58E1.10 ENSEMBL cdna:known chromosome:CEL140:II:1689699:1691146:-1 gene:F58E1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1689740-1691145(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58E1.10
Entrez Gene 173538 Entrez gene
SwissProt Q9TZG2 EMBL-EBI
WormBase CE11390 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67487 Hypothetical protein F58E1.10 [Caenorhabditis elegans] ref|NP_494043.1| F58E1.10 [Caenorhabditis elegans] 0.0
blast AAC67488 Hypothetical protein F58E1.11 [Caenorhabditis elegans] ref|NP_494044.2| F58E1.11 [Caenorhabditis elegans] 0.0
blast AAC67488 Hypothetical protein F58E1.11 [Caenorhabditis elegans] ref|NP_494044.2| F58E1.11 [Caenorhabditis elegans] 1.0E-174
blast AAC67488 Hypothetical protein F58E1.11 [Caenorhabditis elegans] ref|NP_494044.2| F58E1.11 [Caenorhabditis elegans] 1.0E-164
blast AAB66237 Hypothetical protein R07C3.7 [Caenorhabditis elegans] ref|NP_493850.1| R07C3.7 [Caenorhabditis elegans] 2.0E-41
blast AAB66237 Hypothetical protein R07C3.7 [Caenorhabditis elegans] ref|NP_493850.1| R07C3.7 [Caenorhabditis elegans] 8.0E-40
Sequence
Target Sequence 
>C. ELEGANS:184598_AT
tctacgtcctccagaagctgttcgagggaagaagcagtatcaatgtccgcacactgagta
ttgactccatcggcattctccgtataccttccaacttgaatttgaagtttcaaggtttgg
gctgctatgaatatgaacctgacaaaattttgaaagcgcttttgccagaaattccaaacc
caattgtcaacagtgctaaagaactgtttctttacaaaaaagacaggctgataacgttgt
tcaacttgaaagtcactgtcttaacctatgatatgaagtcagtagaagagcccgcggagc
tcgtcgaaaaatggttgacagacggaaaacagattggtacagagttcacactcacagtaa
ttcgagaaattaaagcaaaaatactgcttgatcatgtgaagaggaagttcgagaagagaa
tcgtacggctggaagaattgaatggggagactaccagtgtcaccttgtcgatgaacaact
ctgcggagctagttgtccaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACGTCCTCCAGAAGCTGTTCGA 523 611 704 Antisense
GAAGCAGTATCAATGTCCGCACACT 189 341 734 Antisense
GAAAGCGCTTTTGCCAGAAATTCCA 165 359 855 Antisense
GAAATTCCAAACCCAATTGTCAACA 6 363 871 Antisense
GACAGGCTGATAACGTTGTTCAACT 425 369 925 Antisense
GAAAGTCACTGTCTTAACCTATGAT 615 359 951 Antisense
ACAGATTGGTACAGAGTTCACACTC 210 107 1032 Antisense
GAGTTCACACTCACAGTAATTCGAG 461 395 1045 Antisense
AGACTACCAGTGTCACCTTGTCGAT 252 71 1151 Antisense
ACCTTGTCGATGAACAACTCTGCGG 259 87 1165 Antisense
CTCTGCGGAGCTAGTTGTCCAAAAA 649 231 1182 Antisense
Sequence Source Affymetrix Proprietary Database