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[184597_at]

Description E03H12.2 /REP_DB=WormBase Gene ID /WP=CE09141 /TR=O02128 /GB=AAC47978.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 9.8
(-3)
A 		32
(-1)
A 		20.3
(-2)
A 		75.5
(3)
A 		66
B 12.5
(-3)
A 		46.2
(3)
A 		16.1
(-2.4)
A 		38.3
(1.6)
A 		34
C 79.2
(0.5)
A 		47.4
(-1.1)
A 		8.4
(-3)
A 		130.3
(3)
A 		122
avr 33.8
(-1.3) 		41.9
(-0.6) 		14.9
(-3) 		81.4
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 51.8
(2.8)
A 		29.2
(-0.2)
A 		53.3
(3)
A 		14.6
(-2.1)
A 		13.8
(-2.2)
A 		7.8
(-3)
A 		46
B 60.9
(2.8)
A 		41.1
(-0.5)
A 		47.2
(0.5)
A 		26
(-3)
A 		62.4
(3)
A 		53.9
(1.6)
A 		36
C 17.5
(-2.3)
A 		31.2
(-1.3)
A 		8.6
(-3)
A 		36.9
(-0.8)
A 		27.1
(-1.6)
A 		86.4
(3)
A 		78
avr 43.4
(1.5) 		33.8
(-1) 		36.4
(-0.3) 		25.8
(-3) 		34.4
(-0.8) 		49.4
(3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 3.6
(-3)
A 		6.9
(-0.3)
A 		5.3
(-1.6)
A 		11
(3)
A 		7
B 4
(-2.8)
A 		11.4
(3)
A 		3.7
(-3)
A 		8.2
(0.5)
A 		8
C 26.2
(3)
A 		13.6
(-0.2)
A 		2.9
(-3)
A 		22
(1.9)
A 		23
avr 11.3
(1.5) 		10.6
(1.1) 		4
(-3) 		13.7
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 9.6
(1.8)
A 		10.4
(2.3)
A 		11.6
(3)
A 		3.7
(-1.9)
A 		4.2
(-1.6)
A 		1.9
(-3)
A 		10
B 21.2
(1.6)
A 		13.7
(-0.8)
A 		11.5
(-1.5)
A 		6.9
(-3)
A 		25.4
(3)
A 		20.1
(1.3)
A 		19
C 6.5
(-2)
A 		9.5
(-1.4)
A 		2.2
(-3)
A 		7.4
(-1.8)
A 		8.8
(-1.5)
A 		28.9
(3)
A 		27
avr 12.4
(0.5) 		11.2
(-0.2) 		8.4
(-1.7) 		6
(-3) 		12.8
(0.7) 		17
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184597_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10895
Sequence Type Exemplar sequence
Representative Public ID E03H12.2 NCBI
Target Description E03H12.2 /REP_DB=WormBase Gene ID /WP=CE09141 /TR=O02128 /GB=AAC47978.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068292(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068292 NCBI Caenorhabditis elegans E03H12.2 (E03H12.2) mRNA, complete cds. 11/11 None
SNAP00000020611 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4986982:4987715:1 9/11 None
GENEFINDER00000020623 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4986825:4987715:1 11/11 None
E03H12.2 ENSEMBL cdna:known chromosome:CEL140:IV:4986536:4987715:1 gene:E03H12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4986541-4987721(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E03H12.2
Entrez Gene 184027 Entrez gene
SwissProt O02128 EMBL-EBI
WormBase CE09141 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500693 E03H12.2 [Caenorhabditis elegans] gb|AAC47978.1| Hypothetical protein E03H12.2 [Caenorhabditis elegans] 1.0E-165
blast NP_500693 E03H12.2 [Caenorhabditis elegans] gb|AAC47978.1| Hypothetical protein E03H12.2 [Caenorhabditis elegans] 1.0E-114
blast NP_500692 E03H12.3 [Caenorhabditis elegans] gb|AAC47977.1| Hypothetical protein E03H12.3 [Caenorhabditis elegans] 1.0E-112
blast NP_500693 E03H12.2 [Caenorhabditis elegans] gb|AAC47978.1| Hypothetical protein E03H12.2 [Caenorhabditis elegans] 4.0E-90
blast NP_500692 E03H12.3 [Caenorhabditis elegans] gb|AAC47977.1| Hypothetical protein E03H12.3 [Caenorhabditis elegans] 2.0E-70
blast NP_500691 E03H12.4 [Caenorhabditis elegans] gb|AAC47979.1| Hypothetical protein E03H12.4 [Caenorhabditis elegans] 4.0E-58
blast NP_500692 E03H12.3 [Caenorhabditis elegans] gb|AAC47977.1| Hypothetical protein E03H12.3 [Caenorhabditis elegans] 2.0E-54
Sequence
Target Sequence 
>C. ELEGANS:184597_AT
acttacacgaccggatccaacaattataaactaacgttctcggatccttcctggacaata
acctacgagaaaagttgcgtaaattcgacattcagaatgtttcctaggccaactggacca
ttttgtttagatgtgctatggtcagttggaaatagagtaaaatcttcaacgtactgtaaa
gatttgggcgagggattggatctagctggaatgcaaacgaaaaaagaattcgactatgtt
cttaagacggcaaaaacaaaaagttactacaatacaaactataaatacagtactgtgtgg
ctcagtggaataatgagatcagcctgccaaactagtccggtaccttcaggatgtgacggg
ataaaagcgttctccggtttttcttatcaggataattttgatgtttacaagtttgcgcct
ggctatccaaaaattccgtcttccgcctcacctcgaagcatgcaacttctaatttcacag
agtgaaagtgccttcgagggaatgattggtgatgcactaagtgactatatttgtgatgga
caaagccctccagtgatatgtgtcttttacatgcggaggtcctgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTACACGACCGGATCCAACAATT 111 99 277 Antisense
TTCTCGGATCCTTCCTGGACAATAA 22 691 313 Antisense
ATGTTTCCTAGGCCAACTGGACCAT 295 47 373 Antisense
GGGCGAGGGATTGGATCTAGCTGGA 273 493 462 Antisense
TGAGATCAGCCTGCCAAACTAGTCC 328 567 590 Antisense
ACTAGTCCGGTACCTTCAGGATGTG 508 1 607 Antisense
GTTCTCCGGTTTTTCTTATCAGGAT 482 443 645 Antisense
GATGTTTACAAGTTTGCGCCTGGCT 408 409 676 Antisense
GCGCCTGGCTATCCAAAAATTCCGT 619 287 691 Antisense
AGCCCTCCAGTGATATGTGTCTTTT 387 83 820 Antisense
GTCTTTTACATGCGGAGGTCCTGCT 227 467 838 Antisense
Sequence Source Affymetrix Proprietary Database