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[184593_at]

Description Y75B8A.31 /REP_DB=WormBase Gene ID /WP=CE23042 /TR=Q9XW78 /GB=CAA22091.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 92      6grp_total > 77      4grp_total > 15      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 312.9
(2)
P 		154.9
(-3)
P 		203.7
(-1.4)
P 		343.4
(3)
P 		189
B 255.2
(3)
P 		183.1
(-3)
P 		228.4
(0.8)
P 		244.8
(2.1)
P 		72
C 258
(2.1)
P 		153
(-3)
P 		221.4
(0.3)
P 		277.6
(3)
P 		125
avr 275.4
(2.4) 		163.7
(-3) 		217.8
(-0.4) 		288.6
(3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 308.5
(-0.8)
P 		232.5
(-3)
P 		333
(-0.1)
P 		312.4
(-0.7)
P 		301.9
(-1)
P 		439.5
(3)
P 		207
B 307.2
(-1.7)
P 		253.1
(-3)
P 		307.3
(-1.7)
P 		291
(-2.1)
P 		374.5
(-0.1)
P 		500.7
(3)
P 		248
C 228.5
(-3)
P 		357.6
(-0.2)
P 		269.4
(-2.1)
P 		263.2
(-2.2)
P 		280.7
(-1.8)
P 		500.8
(3)
P 		272
avr 281.4
(-3) 		281.1
(-3) 		303.2
(-2.3) 		288.9
(-2.8) 		319
(-1.9) 		480.3
(3) 		199
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 113.9
(3)
P 		33.6
(-3)
P 		53.2
(-1.5)
P 		50.3
(-1.8)
P 		80
B 81.4
(3)
P 		45.2
(-3)
P 		52.9
(-1.7)
P 		52.2
(-1.8)
P 		36
C 85.4
(3)
P 		44
(-3)
P 		77.2
(1.8)
P 		46.8
(-2.6)
P 		41
avr 93.6
(3) 		40.9
(-3) 		61.1
(-0.7) 		49.8
(-2) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 56.9
(-3)
P 		82.7
(0.1)
P 		72.5
(-1.1)
P 		79.2
(-0.3)
P 		91.1
(1.1)
P 		107
(3)
P 		50
B 106.9
(-1.3)
P 		84.2
(-2.5)
P 		74.6
(-3)
P 		77.1
(-2.9)
P 		152.1
(1.1)
P 		186.7
(3)
P 		112
C 84.7
(-1.3)
P 		109.1
(-0.1)
P 		68.6
(-2.2)
P 		52.9
(-3)
P 		90.8
(-1)
P 		167.6
(3)
P 		115
avr 82.8
(-2.1) 		92
(-1.4) 		71.9
(-2.8) 		69.7
(-3) 		111.3
(-0) 		153.8
(3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184593_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7700
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.31 NCBI
Target Description Y75B8A.31 /REP_DB=WormBase Gene ID /WP=CE23042 /TR=Q9XW78 /GB=CAA22091.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067203(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067203 NCBI Caenorhabditis elegans Y75B8A.31 (Y75B8A.31) mRNA, complete cds. 11/11 None
Y75B8A.31 ENSEMBL cdna:known chromosome:CEL140:III:12351515:12354736:1 gene:Y75B8A.31 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020097 7/11 Cross Hyb Matching Probes None
GENEFINDER00000020199 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12351518-12354732(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B8A.31
Entrez Gene 176658 Entrez gene
SwissProt Q9XW78 EMBL-EBI
WormBase CE23042 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587774_AT similar to CG10038-PB, isoform B cfa
CANINE_2:CFA.14215.1.S1_S_AT similar to CG10038-PB, isoform B cfa
CANINE_2:CFAAFFX.12881.1.S1_AT similar to CG10038-PB, isoform B cfa
DROSOPHILA_2:1625002_A_AT dm
DROSGENOME1:153948_AT dm
CHICKEN:GGA.2141.2.S1_AT similar to hypothetical protein DKFZp564D172 gga
CHICKEN:GGAAFFX.12343.1.S1_S_AT similar to hypothetical protein DKFZp564D172 gga
HG-U133_PLUS_2:223882_AT hypothetical protein DKFZp564D172 hs
HG-U133B:223882_AT hypothetical protein DKFZp564D172 hs
HU35KSUBA:RC_AA133896_S_AT hypothetical protein DKFZp564D172 hs
HU35KSUBC:RC_W15296_AT hypothetical protein DKFZp564D172 hs
U133_X3P:G12052785_3P_AT hypothetical protein DKFZp564D172 hs
U133_X3P:HS.25307.0.S1_3P_AT hypothetical protein DKFZp564D172 hs
HG-U133A_2:212936_AT hypothetical protein DKFZp564D172 hs
HG-U133_PLUS_2:212936_AT hypothetical protein DKFZp564D172 hs
HG-U133A:212936_AT hypothetical protein DKFZp564D172 hs
HG-U95AV2:35142_AT hypothetical protein DKFZp564D172 hs
HG-U95D:70565_AT hypothetical protein DKFZp564D172 hs
HG-U95D:70567_AT hypothetical protein DKFZp564D172 hs
HG-U95E:81972_AT hypothetical protein DKFZp564D172 hs
HG-U95B:42074_AT Hypothetical protein DKFZp564D172 hs
HG-U95E:90821_R_AT Hypothetical protein DKFZp564D172 hs
HU35KSUBD:RC_AA425150_AT Hypothetical protein DKFZp564D172 hs
MG-U74BV2:111612_AT RIKEN cDNA 1110033M05 gene mm
MG-U74CV2:134772_AT RIKEN cDNA 1110033M05 gene mm
MG-U74BV2:164183_AT RIKEN cDNA 1110033M05 gene mm
MG-U74BV2:162842_AT RIKEN cDNA 1110033M05 gene mm
MOE430B:1454723_AT RIKEN cDNA 1110033M05 gene mm
MOUSE430_2:1454723_AT RIKEN cDNA 1110033M05 gene mm
MOE430B:1457516_AT RIKEN cDNA 1110033M05 gene, mRNA (cDNA clone IMAGE:5721149) mm
MOUSE430_2:1457516_AT RIKEN cDNA 1110033M05 gene, mRNA (cDNA clone IMAGE:5721149) mm
MOE430A:1419888_AT RIKEN cDNA 1110033M05 gene, mRNA (cDNA clone IMAGE:5721149) mm
MOUSE430_2:1419888_AT RIKEN cDNA 1110033M05 gene, mRNA (cDNA clone IMAGE:5721149) mm
MOUSE430A_2:1419888_AT RIKEN cDNA 1110033M05 gene, mRNA (cDNA clone IMAGE:5721149) mm
MOE430A:1419889_AT RIKEN cDNA 1110033M05 gene, mRNA (cDNA clone IMAGE:5721149) mm
MOUSE430A_2:1419889_AT RIKEN cDNA 1110033M05 gene, mRNA (cDNA clone IMAGE:5721149) mm
MOUSE430_2:1419889_AT RIKEN cDNA 1110033M05 gene, mRNA (cDNA clone IMAGE:5721149) mm
MOE430B:1441683_AT RIKEN cDNA 1110033M05 gene, mRNA (cDNA clone IMAGE:5721149) mm
MOUSE430_2:1441683_AT RIKEN cDNA 1110033M05 gene, mRNA (cDNA clone IMAGE:5721149) mm
MOE430B:1442550_AT RIKEN cDNA 1110033M05 gene, mRNA (cDNA clone IMAGE:5721149) mm
MOUSE430_2:1442550_AT RIKEN cDNA 1110033M05 gene, mRNA (cDNA clone IMAGE:5721149) mm
MU19KSUBB:TC31531_AT RIKEN cDNA 1110033M05 gene, mRNA (cDNA clone IMAGE:5721149) mm
RAE230A:1375176_AT similar to Sperm 1 POU-domain transcription factor (SPRM-1) (predicted) rn
RAT230_2:1375176_AT similar to Sperm 1 POU-domain transcription factor (SPRM-1) (predicted) rn
RG-U34A:L23864_AT Similar to Sperm 1 POU-domain transcription factor (SPRM-1) (predicted) rn
RAE230B:1380576_AT Similar to Sperm 1 POU-domain transcription factor (SPRM-1) (predicted) rn
RAT230_2:1380576_AT Similar to Sperm 1 POU-domain transcription factor (SPRM-1) (predicted) rn
RAE230A:1389516_AT Similar to Sperm 1 POU-domain transcription factor (SPRM-1) (predicted) rn
RAT230_2:1389516_AT Similar to Sperm 1 POU-domain transcription factor (SPRM-1) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA22091 Hypothetical protein Y75B8A.31 [Caenorhabditis elegans] ref|NP_499604.1| Y75B8A.31 [Caenorhabditis elegans] 0.0
blast CAE66495 Hypothetical protein CBG11775 [Caenorhabditis briggsae] 1.0E-115
blast EAL28650 GA10025-PA [Drosophila pseudoobscura] 3.0E-33
Sequence
Target Sequence 
>C. ELEGANS:184593_AT
tcaggatttgaagtactcccgcacacctgtcgagcacgctgaaactgtctggatagcgtg
tattgagccatcgaatgctaagagcatctacgtggtggctcacagtcgtggtggttacga
cacagccagtgtgctcaaaaagtttggcggagacgatcgtatttcgaaaatctgtctcac
tgattctccatggttcgaatttccgaaaagttgtgcacaacgggcacgtccattgtttgt
cgtcaatttcttggctcacggggctttgaactctccatcatacaaagttcgtgaatatcg
tgaggggaacgtcgccgagctgtgggccggcacacagatacacgagtggtccagtcattg
tgcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGGATTTGAAGTACTCCCGCACA 503 623 441 Antisense
AGCATCTACGTGGTGGCTCACAGTC 159 79 523 Antisense
GGTGGCTCACAGTCGTGGTGGTTAC 304 499 534 Antisense
GTTACGACACAGCCAGTGTGCTCAA 406 445 554 Antisense
TCTCACTGATTCTCCATGGTTCGAA 246 613 615 Antisense
CACAACGGGCACGTCCATTGTTTGT 281 193 656 Antisense
GTTTGTCGTCAATTTCTTGGCTCAC 117 453 675 Antisense
GGCTTTGAACTCTCCATCATACAAA 196 537 702 Antisense
TATCGTGAGGGGAACGTCGCCGAGC 554 649 736 Antisense
GAGCTGTGGGCCGGCACACAGATAC 96 387 757 Antisense
ACGAGTGGTCCAGTCATTGTGCAAT 419 93 782 Antisense
Sequence Source Affymetrix Proprietary Database